Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0840 ATGGCAATGAAGCCATCAAACAACATCTGGATTCGTCGCCAGCAATGCCCATGTGGAGATTGGAAATGCTATATCAAATATGAAGGAGATGATCAGACTTCAGCAAACTCTCAATTGGTAAAGAGTGAGACATCATCGTCATCTTTAGCATCAGAAGTCGTCTTCACTCCATATGTGGGTCAGATATTCAAAAGTGATGATGAAGCATTTGAGTACTACAGCAACTTTGCTCGGAAGAATGGGTTTTCAATAAGAAAAGCACGCTCAACTGAAAGCCAAAATTTGGGTATTTACCGAAGAGATTTTGTTTGTTATCGTTCTGGGTTTAATCAACCAAGAAAAAAGGCCAATGTTGAGCACCCCAGGGATCGGAAATCAGTACGATGTGGGTGTGATGCAAAGCTGTACTTGACCAAGGAAATTGTTGATGGCGTTACTCAATGGTATGTTTCACAATTCAGTAATGTTCATAATCATGAATTGCTGGAAGATGACCAAGTGCGTCTGCTTCCTGCATATCGGAAAATACAGGAGGCTGATCAGGAACGCATTCTTTTGCTTTCCAAAGCTGGTTTTCCTGTGAATCGGATAGTGAGGGTGTTGGAAACAGAAAAGGGAGTTCAACCTGGGCAACTTCCCTTTATAGAGAAGGATGTTAGGAATTTTGTTCGAACATGTAAGAAAACTGTTCAAGAAAATGATGCTTTGCTCACTGAGAAAAGAGAAAATGATACATTGGAACTCCTTGAAACTTGCAAGGCTTTGTCAGAGAGGGATCCGGATTTTGTTTATGATTTTACTATGGATCCAAATGATAAGGTTGAGAATATTGCATGGTCATATGGGAACTCTGTTCATGCATATTCAGTGTTTGGTGATGTGGTTGCTTTTGACACTACATATCGCTCTATCACCTATGGATTGCTCTTGGGTGTGTGGTTTGGCATAGATAATCATGGCAAGGCAATCTTCTTTGGATGTGTTTTGCTGCAAGACGAAACTTCTCAGTCATTTGCATGGGCTTTACAGACTTTTGTTCGGTTTATGAGAGGAAGACGTCCACAAACAATTCTAACTGATATAGATTCTGGGCTTAGAGATGCTATAACTAGTGAATTGCCAAATACTAAACATGTAATATGTTTATGGCATATTCTGTCTAAATTATCCAGTTGGTTTTCTTTGCCACTTGGACCACAGTATATGGATTTTAAATCTCAGTTTGATATATTGTGTCGTCTGGAGAGCATAGAGGATTTTGAACATCAGTGGCATCACCTTGTTGCTCAGTTTGGACTTGTTTCTGATAAACATATTGGTCTGCTCTTTTCTTATCGAGCATCCTGGCCATTTTCCTGCATTAGAGGTTACTTTCTAGCTCGTATGATGACGTCTGAGTACTCAAAATCTTTGGACATGTTCTTCAAAAGAATCTTGAGTGCACAAACATGTTTGCAAGCTTTCTTTGAGCAGGTTGGTGTTGCTGCTAGTTGGGCAAATCAGACCAGAGAAAACATGCAATATATGCATATTAAGACATGCATGCCTATTGAAGAACATGCACAGAGTATTCTTACGCCTTATGCCTTCAATGTGTTACAACATGAAATAGTGCTGTCTATGCAATACGCAACAAGAGAAATGGCTAACGGGTCATATCTTGTGCGTCACTATAAGACAGTGGATGGGGGATGTCTTGTGATTTGGATGCCAGAAGAAGAGCAAATTCACTGTTCCTGTAAGGAATTTGAACATTCAGGGCTTTTATGCCGGCATTCTCTCCGACTACTTGTTGTAAAGAACTACTTTCAACTCCCAGATAAATACTTCCCACTTAGATGGCGAAAGGAGAGTTCCTTAATTACTATGGATGATCACAACACTCAAAGCAACAGTGATGAGTGTTCTCAAGCCTTCCATTCTCTTGCTGCAACTCTGCTGACAGAATCATTGGTTTCCAAGGAAAGGTTTAATTATGTTCATAAAGAACTCACAGGGCTTCTTGATCATGTTAGGAATATGCCAGTTGTTGATGAAGTTTCTTTGAATATGGCACCTAACAATGTTGATGAGTCTTAG 2079 0.3983 MAMKPSNNIWIRRQQCPCGDWKCYIKYEGDDQTSANSQLVKSETSSSSLASEVVFTPYVGQIFKSDDEAFEYYSNFARKNGFSIRKARSTESQNLGIYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIVDGVTQWYVSQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPVNRIVRVLETEKGVQPGQLPFIEKDVRNFVRTCKKTVQENDALLTEKRENDTLELLETCKALSERDPDFVYDFTMDPNDKVENIAWSYGNSVHAYSVFGDVVAFDTTYRSITYGLLLGVWFGIDNHGKAIFFGCVLLQDETSQSFAWALQTFVRFMRGRRPQTILTDIDSGLRDAITSELPNTKHVICLWHILSKLSSWFSLPLGPQYMDFKSQFDILCRLESIEDFEHQWHHLVAQFGLVSDKHIGLLFSYRASWPFSCIRGYFLARMMTSEYSKSLDMFFKRILSAQTCLQAFFEQVGVAASWANQTRENMQYMHIKTCMPIEEHAQSILTPYAFNVLQHEIVLSMQYATREMANGSYLVRHYKTVDGGCLVIWMPEEEQIHCSCKEFEHSGLLCRHSLRLLVVKNYFQLPDKYFPLRWRKESSLITMDDHNTQSNSDECSQAFHSLAATLLTESLVSKERFNYVHKELTGLLDHVRNMPVVDEVSLNMAPNNVDES* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0840 692 SMART 26again6 576 603 IPR006564 GO:0008270
Vvi12g0840 692 ProSiteProfiles Zinc finger SWIM-type profile. 566 601 IPR007527 GO:0008270
Vvi12g0840 692 Pfam SWIM zinc finger 573 597 IPR007527 GO:0008270
Vvi12g0840 692 Pfam MULE transposase domain 294 387 IPR018289 -
Vvi12g0840 692 Pfam FAR1 DNA-binding domain 71 162 IPR004330 -
Vvi12g0840 692 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 51 673 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0840 Vvi-Chr12 9649090 9651334 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi12g0840 MULE 1.7e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0840 - - vvi:100247766 1405.19