Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0837 ATGGATGGAATATACAAAAATGGAAAAGTTTTTTCTATTAAGAAATCACAGCCCATTTTAGTTCAATCCGAGGGGGCAACTCATGATAAAGAGTTCTATTTCTTATCCAACCTTGATCAGAACATCGCTGTTATCATTCAAACAGTGTACTGTTTCAAGCAAGATGGAATGAATAGTAGTAAAAACGTCGCGAATGTGATCAAGCAAGCGTTGGCAAAAGTTCTAGTTCATTTCTACCCGTTGGCTGGGAAGTTAACAATTAGTCCTGATGGAAAGCTTATTGTAGAGTGCTCGAACGACGGTGTGCCTTTTGTTGAAGCCGTTGCAGACTGTAGTATGGATGTGTTGGGTGATATCAGTACTATACCTGATCCTGCCATGTTGGGAGAGCTTGTTCATACTGTTCCCGAAGCGAAAAACATACTAGAAATGCCTCTTCTGACTGCACAGGTAACAAGGTTCAAGTGTGGAGGATTTGTTCTTGGCATGACAATTAATCACTGCATGACTGACGGAATATCTGCAATGGAGTTTGTAAATTCATGGGCAGAGACAGCTAGAGGGATATCACTGAGCGTCCCACCTTTTGTGGACAGATCCATATTGAGATCTAGACAACCACCTAAGATCAATTATGACCATAAAGAGTTCATGGAGATAAAGGACAAGTCAAACATGGAGCGTCTCTATCAAGAAGAGCAAATGGTATATAAATCATTCCATTTTGATCAGGAAAAGCTAGGGCGATTAAAGAAACTAGCAATGGAGGATGAGGTGATAAAGAGCTGCACAAGCTTCACAGTGCTCACAGCTCTAGTGTGGCGTGCCCGAAGCAAGGCACTCAAGATGAGATCCGACCAAGAAACCAAGCTACTATTTGCAGTTGATGGGAGATCCAAGTTCAATCCACCCTTGCCCAAAGGGTACTTTGGCAATGGTATTGTCCTAACTTGTTGTCTTTGCAAGGTAGGAGAATTGATCGAAAAACCGTTTTCTTATGCAGTGGGCCTAGTACAAGATGCAATAAAAATGGTGAACGAGGACTTTATCCGTTCAACCATTGATTACTTTGAAGTAACTAGAGCAAGGCCTTCGTTAACTGCCACCCTTTTGATCACTTCATGGACTAGACTCTCTTTTGATACTACCAACTTTGGGTGGGGAGATCCTACACAATCTGGTTGTGTGACCTTGCCTGAGAAAGAAGTGGCTTTGTTTCTCTCAAAAGGAAAAGAGAAGGGCACCACTTTACTTTTGGGATTGCCCCTTACTGCCATGAAGACCTTCCAAGAGCTTATTCAAGCTTAG 1308 0.422 MDGIYKNGKVFSIKKSQPILVQSEGATHDKEFYFLSNLDQNIAVIIQTVYCFKQDGMNSSKNVANVIKQALAKVLVHFYPLAGKLTISPDGKLIVECSNDGVPFVEAVADCSMDVLGDISTIPDPAMLGELVHTVPEAKNILEMPLLTAQVTRFKCGGFVLGMTINHCMTDGISAMEFVNSWAETARGISLSVPPFVDRSILRSRQPPKINYDHKEFMEIKDKSNMERLYQEEQMVYKSFHFDQEKLGRLKKLAMEDEVIKSCTSFTVLTALVWRARSKALKMRSDQETKLLFAVDGRSKFNPPLPKGYFGNGIVLTCCLCKVGELIEKPFSYAVGLVQDAIKMVNEDFIRSTIDYFEVTRARPSLTATLLITSWTRLSFDTTNFGWGDPTQSGCVTLPEKEVALFLSKGKEKGTTLLLGLPLTAMKTFQELIQA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0837 435 Gene3D - 218 434 IPR023213 -
Vvi12g0837 435 FunFam Spermidine hydroxycinnamoyl transferase 11 217 - -
Vvi12g0837 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 27 432 - -
Vvi12g0837 435 Pfam Transferase family 32 431 - -
Vvi12g0837 435 Gene3D - 8 217 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0837 Vvi-Chr12 9633646 9635733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0837 35 433 Monolignol Biosynthesis Gene Families AT5G48930 34.906 7.21e-79 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0837 K15400 - vvi:100259728 852.047