Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0836 ATGGGTCGTTCTCGCGCAGTTCTGCATTCTACTGACGATGATCAAGGTTCACACAGATCCAAGAGAAGAAAGACTGCTTCAACAGCAGACAATTTAGAGGGTGCAACTGCAGGCCAAGGAATGAGTGAGGGGAAGAGAGCTTCATACCACTGTAATTATTGCAGCAAAGATATCTCAGGAAAGATCCGTACCAAATGTGTAGTTTGTCCCGATTTTGACCTTTGCATTGAATGCTTTTCCATTGGAGCTGAGGTTACACCTCACGTATGCTTTCATCCATATCGGGTCATGGACAATTTATCGTTCCCACTCATTTGTCCTGATTGGAATGCAGATGAAGAGATGTTACTTCTGGAGGGAATTGAAATGTACGGACTGGGGAACTGGAGTGAAGTTTCAGAACATGTTGGAACCAAAAGAAAATCAGAATGTATCGATCACTATGTTGCTATATACATGAATTCCCCATGCTTTCCTCTTCCTGACATGTCCCATGTTCTTGGAAAGACTAGGGCTGAGCTCCTTGCCATGGCCAGGGGAGAAGATGAAGTCAAGAAAGGATCCCCTACACATGGGGAGTTAACTCTGAAAGTGGAATCTCCCTTATCTGCAAGAGTCAAGGTTGAAGAATCAAGAAAAGAAGAGATCCAATCCGACATGGTTTCTAGCAGCACTAAAACATCTGCAGGTGCAGTTAAGAGGGCATCTAACATGGCCCAGGTTAAGGATGGTCGTGATAACATTAAAGTGGAAGAAACTCAAACAGACAGAAGTGTTGGAGAGAAAAAGCCTAGGACCTCAGGGGATGAGGGGCCTTCTGTGACAGAGCTGAGTGGATACAATTTCAAGAGGCAAGAGTTTGATGTTGAGTATGATAATGATGCTGAGCAGTTACTGGCTGATATGGAATTCAAGGATACTGACACTGATGCTGAGCATGAACTGAAACTGCAAGTTCTGCATATTTATTCCAAAAGGCTTGATGAGAGGAAACGCAGGAAGGATTTCATATTGGAAAGAAATCTACTTTACCCTGACCCTTTTGAGAAGAACCTCTCACCCGAAGAGAGGGACGTAAATCAGCGCTTCAAGGTCTTTATGCGGTTCCACTCAAAAGAAGAACATGAGGAACTGCTTAGGGTTGTGCTCGAGGAACATTGGATTCAGAAAAGAATACAAGATCTTCAGGATGCCCGAGCTGCTGGCTGCCGTACATCTGCTGAGGCAGAGAGATATCTTGAAGAGAAAGGGAAGAAAGAAGCTGAAGAAAGTGCCCAACAAGCAAAGGAAAGTGCTGAGGCTGGTCCTAGTGGGGGTAAAGTCTTACAGAGGGTGAACACTGCCAAAGGAGAATCTGATGGCAGTCCTCGGGGAGGTGGAAGAGGTTCTGCAGGTCTAGAGCCTGGAATCAAGGACACTTCTTCAACAACTGCAGGACATGCTATCTTAAGATCCCTAGATGTTTGGGATATCACTGGATTTCCGGGGGAAGATTTACTCTCAGAAACTGAGAAACAGCTTTGCAGTGAGATCAGAATCCTCCCTTCACATTATCTCAACATGCTGCACACCATGTTGACAGAGACGTTAAATGGAAACATCACCAGGAAATCAGATGCCCATGGCCTGTTCAAGGTTGAACCAAGCAAAGTAGACAAAGTGTACGATATGTTTGTGAAGAAGGGAATTGTTAAGTCATAG 1701 0.4468 MGRSRAVLHSTDDDQGSHRSKRRKTASTADNLEGATAGQGMSEGKRASYHCNYCSKDISGKIRTKCVVCPDFDLCIECFSIGAEVTPHVCFHPYRVMDNLSFPLICPDWNADEEMLLLEGIEMYGLGNWSEVSEHVGTKRKSECIDHYVAIYMNSPCFPLPDMSHVLGKTRAELLAMARGEDEVKKGSPTHGELTLKVESPLSARVKVEESRKEEIQSDMVSSSTKTSAGAVKRASNMAQVKDGRDNIKVEETQTDRSVGEKKPRTSGDEGPSVTELSGYNFKRQEFDVEYDNDAEQLLADMEFKDTDTDAEHELKLQVLHIYSKRLDERKRRKDFILERNLLYPDPFEKNLSPEERDVNQRFKVFMRFHSKEEHEELLRVVLEEHWIQKRIQDLQDARAAGCRTSAEAERYLEEKGKKEAEESAQQAKESAEAGPSGGKVLQRVNTAKGESDGSPRGGGRGSAGLEPGIKDTSSTTAGHAILRSLDVWDITGFPGEDLLSETEKQLCSEIRILPSHYLNMLHTMLTETLNGNITRKSDAHGLFKVEPSKVDKVYDMFVKKGIVKS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0836 566 ProSiteProfiles SWIRM domain profile. 480 566 IPR007526 GO:0005515
Vvi12g0836 566 ProSiteProfiles SANT domain profile. 104 156 IPR017884 -
Vvi12g0836 566 ProSiteProfiles Zinc finger ZZ-type profile. 46 102 IPR000433 GO:0008270
Vvi12g0836 566 PIRSF Txn_adaptor_ADA2 36 566 IPR016827 GO:0003713|GO:0006357|GO:0035065
Vvi12g0836 566 FunFam Transcriptional adapter 42 97 - -
Vvi12g0836 566 Gene3D - 107 156 - -
Vvi12g0836 566 SUPERFAMILY Homeodomain-like 470 564 IPR009057 -
Vvi12g0836 566 FunFam Transcriptional adapter 2 482 565 - -
Vvi12g0836 566 SUPERFAMILY RING/U-box 48 112 - -
Vvi12g0836 566 Gene3D - 40 93 IPR043145 -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 414 476 - -
Vvi12g0836 566 SMART zz_5 45 90 IPR000433 GO:0008270
Vvi12g0836 566 SMART sant 105 154 IPR001005 -
Vvi12g0836 566 Pfam Zinc finger, ZZ type 46 80 IPR000433 GO:0008270
Vvi12g0836 566 ProSiteProfiles Myb-like domain profile. 109 152 IPR001005 -
Vvi12g0836 566 Pfam Myb-like DNA-binding domain 108 148 IPR001005 -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 1 43 - -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 1 28 - -
Vvi12g0836 566 FunFam Transcriptional adapter 2 102 154 - -
Vvi12g0836 566 SUPERFAMILY Homeodomain-like 102 155 IPR009057 -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 244 269 - -
Vvi12g0836 566 Gene3D - 483 566 IPR036388 -
Vvi12g0836 566 CDD ZZ_ADA2 49 97 IPR041983 -
Vvi12g0836 566 CDD SANT 109 148 IPR001005 -
Vvi12g0836 566 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 48 562 - -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 210 277 - -
Vvi12g0836 566 MobiDBLite consensus disorder prediction 220 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0836 1 563 EF-hand Containing Proteins AT3G07740 52.778 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi12g0836 Myb_DNA-binding 3.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0836 K11314 - vvi:100254619 1087.02