Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0829 ATGACGCTGAACGTTACGGAACCGAATATTCATGATTTCGGCAAGCTCAATCAGGAGCAGGAAACATTGCAACTCTCTGTTCTGTTCAAGATGGCTAATGGGAGCTTAGAAGACCGGATTTTCAGGCGAGGAGACTTTCCACTGTCTTGGCAGCCGAGGTTCCGAATCGCAGCTGAAATTAGCACTGGACTATTGTTCCCCCACCAGACTAAATCAGAGCCACAAGTGCACCATGACCTAAAACTGGCGAGCATACTGCTGGACCCCAACTACGTGAGCAAGATTAGTGACGTTGGGTTGGTCAGGCTGGTTCCCCTATCTGTAGCTGACAGTGTGACCCAGTATCAGATGAAATCAACAGCTGGGAATTTCTGCTATATAGATCCAGAGTATCAGCAAGCAGGCATGCTGGGCATAAAATCTGATGTCTACTCCCTTGGCATCATGCTTCTACAGATAATAACAGCCAAGCCGCCAATGGAGTTGATCCACCTTGTTGAAAGAGCTATCAGAAAAGGTATATTCAAATAG 531 0.4689 MTLNVTEPNIHDFGKLNQEQETLQLSVLFKMANGSLEDRIFRRGDFPLSWQPRFRIAAEISTGLLFPHQTKSEPQVHHDLKLASILLDPNYVSKISDVGLVRLVPLSVADSVTQYQMKSTAGNFCYIDPEYQQAGMLGIKSDVYSLGIMLLQIITAKPPMELIHLVERAIRKGIFK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0829 176 Pfam Protein kinase domain 5 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0829 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0829 176 PANTHER OS02G0152300 PROTEIN 31 175 - -
Vvi12g0829 176 Gene3D Transferase(Phosphotransferase) domain 1 1 174 - -
Vvi12g0829 176 SUPERFAMILY Protein kinase-like (PK-like) 23 167 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0829 Vvi-Chr12 9541444 9543349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0829 31 176 Receptor kinase-like Gene Family AT5G12000 72.789 5.00e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi12g0829 Pkinase 9.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0829 - - vvi:100250706 233.417