Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0818 ATGGAATTGAAGAAAGAGGAGGCTCTTAGAGCTAAAGAGAATGCGGAGAAGCAATTTGCTGAGAAAAACTTTGCCGGTGCAAAGAATTTTGCTTTGAAGGCCCAGTCGGTGTGTCCGGACCTGGAGGGTATATCTCAAATGGTGGCTACATTTGAGGTTTATATTGCTTCTGAGGTCAAAGTTAATGGTGAAACTGATTATTATTCCATTCTTGGATTGTTGCCAACTGCAGACAAGGCAACTGTGAAGAAACAGTATAGGAAGCTCGCTGTTTTGCTTCACCCTGATAAAAACAAAACTGTTGGAGCTGATGGAGCATTCAAGCTTGTTTCTGAAGCATGGACTCTGTTGTCAGATAGTGCTAAGCGAAGCTCTTATGATCTCAGGAGGAGCCAACTATTGTCGTCTGCAGTTGTCCAGAGAAGCTCGGCTTCAGCTCATACTGCTGGGTTTACAGGCTTTGACAATTGTTCCCATTCACCAGTTACTCATACTAGACTTGACACTTTCTGGACTGTTTGCACCTCTTGTAAAGTTCAGTATGAGTATCTTCGGAAGTACTTGAATAAGAGACTCTCTTGTAAGAACTGCCGGGGTACTTTCATGGCTGTGGAAACGGGGACAGCCCCAGTGAATGGTTCATTCCCTTACTGTTCATGGTCGCACTTGCATGAAAATGGGTATGGAACTCATGGATTCAATGGGGTTACATATTTTCCTACCAATGCAACTTTCTATTCACGAAATGGGGTTTCAGGATATCATTCTGGACATGGGTCTGAGTATGTTCCAAACGTGCCATTCCAGTGGAGTTCATTCCCTGCTGCTTCTACTGGAATTGGGGGTCCTAATGGATCAGCTGCTAAATCTGCTGATGTTGTTTATCATACCACTGAGAGCATTAATAGAGCAGGAGAGAAGGCCAATAGACCTGATAAGAAAAGGAAAATTGAAGGTAGAGGTGCATCTAGAAATGGGAATGATGAAATGGGTTCGAAAACGGCTACAGAAGTCACAACAGCTAATGGAAATGGAAATGTTGGACTTAATCCCAAGCTTTCCACCGCAAGTGAGACCGTAGCTAAACGTCCATCAGTTGCGCCCGCATTTGATGCTAGAAAGTTGTTAATTGAGAAGGCAAGAACAGAAATAAGAAAGAAATTGGAAGAGATGAAGTTGGCTGCGGCAGCGGCGGCAGAGGCAGCAGCAGCTGCAAAAGCAGCAAGAGAAGCAGCTGAAGCAGTTGCAGCAGCTGCAGCTAGGGAGAATGTAGAGTTACCTAAAAGAGCATATCTGGGAGTTCCTGGCCATCAGTCTGAACTGCATAGGACTGGGTCTACTACTTCAATAACAGTCCCTGACCCAGACTTCCACGACTTTGACAAGGACAGGTCAGAGGAATGCTTCAAGCCAAAGCAAATATGGGCTATATATGATGAAGAAGATGGTATGCCTCGCTTATATTGTCTGATCCGTGAAGTGATCTCCGTGAAACCATTTAAAGTTCATATTAGTTACTTGAACTCTAAAACTGATGCCGAGTTTGGGTCCGTAAATTGGATAGATTCTGGGTTTACCAAATCTTGTGGAAATTTCAGGGCATGGAATTCTGATATTGTTGAACAAGTTAACATCTTCTCTCATTTGCTAAGCGGTGAGAAGGCTGGCAGGGGAGGCTGTGTTCGGATTTACCCCAAAAGTGGAAATATTTGGGCTGTGTATCGGAACTGGTCACCAGATTGGAATCGATCAACCCCAGATGAAGTAAGGCACCAGTATGAGATGGTGGAGGTTCTTGATGATTACTCTGAAGAGCTTGGTGTATGTATTGTTCCCCTTGTTAAATTGGATGGTTTCAAAACTGTGTATCAGAGGAATACTGACAAGAATGCCATTCAATGGATTCCGAGAAGAGAGATGCTACGCTTTTCACACCAGGTACCGTCCTGGTTACTTAAAGGAGAAGCAAGTAACCTGCCAGAAGGGTGCTGGGATTTGGACCCGGCTGCAACTCCAGATGAGCTGCTTCAGACTGCAACTCCAGATGAGCTGCTTCAGGCTGCAACAGAGGTGAAGGCTGAATAG 2085 0.446 MELKKEEALRAKENAEKQFAEKNFAGAKNFALKAQSVCPDLEGISQMVATFEVYIASEVKVNGETDYYSILGLLPTADKATVKKQYRKLAVLLHPDKNKTVGADGAFKLVSEAWTLLSDSAKRSSYDLRRSQLLSSAVVQRSSASAHTAGFTGFDNCSHSPVTHTRLDTFWTVCTSCKVQYEYLRKYLNKRLSCKNCRGTFMAVETGTAPVNGSFPYCSWSHLHENGYGTHGFNGVTYFPTNATFYSRNGVSGYHSGHGSEYVPNVPFQWSSFPAASTGIGGPNGSAAKSADVVYHTTESINRAGEKANRPDKKRKIEGRGASRNGNDEMGSKTATEVTTANGNGNVGLNPKLSTASETVAKRPSVAPAFDARKLLIEKARTEIRKKLEEMKLAAAAAAEAAAAAKAAREAAEAVAAAAARENVELPKRAYLGVPGHQSELHRTGSTTSITVPDPDFHDFDKDRSEECFKPKQIWAIYDEEDGMPRLYCLIREVISVKPFKVHISYLNSKTDAEFGSVNWIDSGFTKSCGNFRAWNSDIVEQVNIFSHLLSGEKAGRGGCVRIYPKSGNIWAVYRNWSPDWNRSTPDEVRHQYEMVEVLDDYSEELGVCIVPLVKLDGFKTVYQRNTDKNAIQWIPRREMLRFSHQVPSWLLKGEASNLPEGCWDLDPAATPDELLQTATPDELLQAATEVKAE* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0818 694 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vvi12g0818 694 PANTHER BNAC03G44070D PROTEIN 1 672 - -
Vvi12g0818 694 MobiDBLite consensus disorder prediction 301 333 - -
Vvi12g0818 694 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vvi12g0818 694 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vvi12g0818 694 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vvi12g0818 694 SUPERFAMILY Chaperone J-domain 57 131 IPR036869 -
Vvi12g0818 694 Coils Coil 402 422 - -
Vvi12g0818 694 Pfam Domain of unknown function (DUF3444) 448 655 IPR024593 -
Vvi12g0818 694 MobiDBLite consensus disorder prediction 303 323 - -
Vvi12g0818 694 Coils Coil 3 23 - -
Vvi12g0818 694 Coils Coil 377 397 - -
Vvi12g0818 694 Pfam DnaJ domain 66 127 IPR001623 -
Vvi12g0818 694 SMART dnaj_3 65 122 IPR001623 -
Vvi12g0818 694 CDD DnaJ 66 119 IPR001623 -
Vvi12g0818 694 Gene3D DnaJ domain 63 171 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0818 Vvi-Chr12 9329724 9331895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0818 5 262 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.273 2.89e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0818 - - vvi:100240890 1335.47