Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0816 ATGAGTTTTTCGGCTGTGGCTGGGGTTTTTCTTAAGCTCTCAAGACTCATTTTGAAGATATGCAGGTGGGTTTTGCTTAAGATGTCCTTGAATTGCAAGCTTTCTGGCTTTAGTGGCAGATTGCCGGCCAATTTGAAGCTGAAGAAGTCAAAGGAGCCTTTGCATGGGTCTAATTGTGTCAGGAAATGGAGGAGAAAGTTTCTGTTATTGTGGCTTTTAGGAGTTATTATTGGCCTCATTTGTTTTCTCTCAGTTTTGAATGCTGGGGCTTTGAGTAGGAAGGAGAAGACTCCAGACTTGTGTGAAGAAAAAGCTCGAATCTTGCTAGAGCATTTCAATGTCAGCAAGAACCAGCTTCATTCTTTGGCTTCTTTATTCGCTGAATCAGATCAGATAGCGTCCTTGGAATGTACCAAAGAAGCAGGATTTGAAATGCCACCAGGCAATGCTATTGCCTGTGCACTTAAGGTACCATGTTCACAGAATCAAGAGTTTGAGAAGCAGCATGATCAGGCTGCAGAAAGTTTAGAACCTAATGACCAATGCCCAGTTCGAGATGAGAACATCCCTGGAAAGCTTGACCTATCTTTGCTAGGGGACCAATCTGCATCATTTAGTTCGCAGTCTACGTCTTCATCAGTTTCGCTTGATGGTCAGAGTGGTGAAAAGATTAGGGCTCTGGCGAACTGTACAAAAGAGCACTGTGAGAATTTTTCTCTCTGTTTGGTAAAAGTTGGTTGGTGGGTCCTTGTTGGAATGGTTGTGAGCTGCAAGTTGTCTGGTTCTCATGTGAAACTGTGGGGGAATCGGAAGCAGAAACTGGTTGAGCAGCAGAAGCTGGTTGAGCAGCAGTCACAGGTTCAGCAGCAGCGGCAGTTGCGGCCGAAGCAGCAACAGCCGGCCCAGAGTTCATCTAAAGTTGCTGGGAAGTGGAGGAAGAAGCTCCTAATAATATTTGTCTTACTTGGGGTGATTATATCTATTTGGTTATTTTGGCACTTGAATAAGGATATTAACTTGAGAAGAAGGGAAACACTTACCAATATGTGCGATGAACGAGCCCGGATGTTGCAGGATCAGTTCAATGTGAGCATGAATCATGTGCATGCATTGGCTATTCTTGTTTCAACCTTTCACCATGGAAAACACCCTTCTGCTATTGATCAGAAAACATTTGGAGAATATACCGAGAGAACGGCTTTTGAGAGGCCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCACTCAGAAAGAGAACACTTTGAAAAGGAACATGGATGGACAATAAAGAAAATGGAAACTGAGGACCAGACTCTAGTCCAAGATTGTATTCTGGAAAATTTAGATCCATCACCCATTCAAGATGAATATGCACCCGTCATATTTTCTCAAGAAACAGTTTCTCATATAGTATCTATTGACATGATGTCTGGAAAGGAAGACCGTGAGAACATCTTGCGAGCTAGGGCATCTGGAAAGGGAGTATTGACATCTCCTTTTAAGCTACTGAAATCCAATCACTTGGGTGTTGTACTCACATTTGCTGTCTATAACGCTGACCTACCTCCAGATGCTACACCAGAGCAACGTATTGAAGCTACTGTAGGGTATCTAGGTGCGTCTTATGATGTCCCATCACTAGTGAAGAAGCTTCTACACCAACTTGCCAGCAAGCAGACGATAGTTGTGAATGTTTATGATACAACTAATGCATCTGCACCCATCAATATGTATGGTACTAATGTTACAGATACGGGCCTATTGCGCATTAGCAACCTTGATTTTGGGGATCCAGCTCGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAGCCTCCTCCACCTTGGACAGCAATAACGGCATCAGTTGGGGTCTTAGTTATTACTTTGCTTGTGGGCCATATTTTTCATGCTGCCATAAACCGAATCGCAAAAGTGGAGGGTGATTATCGTCAGATGATGGAACTCAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCCCACGAAATCAGGACTCCGATGAATGGTGTTTTAGGTATGCTGAAAATGCTGATGGACTCGGGTCTTGATGCAAACCAACAGGATTATGCTGAGACTGCTCATGCTAGTGGGAAAGATCTAATATCACTGATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGAAGGCTCGAGCTTGAAGCTGTTCCTTTTGATTTGCGTGCTGCTCTTGATAATGTTTTATCACTCTTCTCAGGCAAATCTCATGAAAAGGGGATCGAGTTGGCTGTCTACATCTCTGATCAAGTGCCTGAATTTGTCATTGGAGACCCCGGGCGCTTCAGGCAGATAATTACCAATCTTGTTGGAAATTCAATAAAGTTCACACATGACAAAGGGCATATCTTTGTCTCGGTGCATCTGGCAGATGAAGTGGTGGGGCCACCTGATCTCAGGGACGAAGTGCTGAGACAGAGCTTGAATATAGTCCATGACAGCTCAAACAATTCCTATAATACATTGAGTGGGTTTCCTGTGGTCAACAGATGGAAAAGCTGGGAGAAGTTTAAAAAGTTAAGCTGCACAGATTCAATGGAGGAAACCAGCATAATTAAATTATTAGTGACTGTCGAGGATACGGGTGTGGGAATACCTTCAGAAGCTCAAAGTCGAATTTTCATGCCTTTTATGCAGGCTGACAGTTCCACTTCTCGAACGTATGGTGGGACTGGAATAGGATTAAGCATTAGCAAGCGTTTGGTGGATCTTATGGGTGGGGAAATTGGGTTTGAGAGTGAACCCGGCACTGGAAGTACCTTCTCATTTACTGTGGCTTTCACAAAAGGAGAAACTAGTTTACTAGATACAAAGCAGCAACCTCATGATCCAGCTGGTTCTGAGTTCCAAGAATTGAGAGCCTTGGTGGTTGATTGTAGAAGCATCCGAGCTGAGGTTACAAGATATCATCTTCAGAGATTGGGCATATCAGTCGATAAAACTTTCAGCCTAATATCTGCATGCTCTTATCTGTCCAATAATTCCGATCCAAGTGCATCAACTAGTGTAGCTATGGTTCTGGTTGACAAAGAGGTTTGGGATAAGGAGGCTGGTCTTGTTTTCCATCATATGCTCAAAGAGCTCAGGCCAAATGGCACTGTGGAAGTCCAAGAAAAACGTCCAAAAATATTCCTTTTGGACACCTCTCTGAGCTCTGCTGAGCGCAATGAGCTCAAATCAGCTGGTTTTGTGGATAATGTACTAATGAAGCCTCTTCGGTTAAGCGTATTGATTTCTTGCTTCCAGGAAGTCTTTGGAATTGGCAAGAGAAAGCAAGCGAATAGAGGAAAACCATTAACTCTTGGGAATCTGTTAAGAGAAAAGCGAATCTTGGTGGTGGATGACAATGCTGTTAACCGAAGGGTGGCAGAATTTGCTCTCAAGAAGTATGGAGCAATTGTCACCTGCGTGGACAGTGGCAAGGCTGCTCTTTTGATGCTTAAGCCACCCCATAACTTTGATGCTTGCTTCATGGATCTCCAAATGCCAGAGATGGATGGGTTTAGAGCAACACAGGAAATCCGCCGAATGGAGAGCAAGGTTAATGAGAGAATTAAATCTGGAGAAGTATCAATAGAGATGTTTGCAAATGTGGCTTATTGGCACACACCAATTTTAGCAATGACTGCTGATGTTATTCAGGCAAATAATGAAGAGTGCATGAAGTGTGGAATGGATGGTTATGTGGCAAAGCCATTCGAAGAAGATCAGCTTTATTCAGCAGTGGCACATTTCTTTGAGTCTGGTTAA 3819 0.4336 MSFSAVAGVFLKLSRLILKICRWVLLKMSLNCKLSGFSGRLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLGVIIGLICFLSVLNAGALSRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQSASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSGSHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVVGPPDLRDEVLRQSLNIVHDSSNNSYNTLSGFPVVNRWKSWEKFKKLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG* 1273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0816 1272 PRINTS Bacterial sensor protein C-terminal signature 877 891 IPR004358 GO:0016310|GO:0016772
Vvi12g0816 1272 PRINTS Bacterial sensor protein C-terminal signature 936 949 IPR004358 GO:0016310|GO:0016772
Vvi12g0816 1272 PRINTS Bacterial sensor protein C-terminal signature 912 930 IPR004358 GO:0016310|GO:0016772
Vvi12g0816 1272 PRINTS Bacterial sensor protein C-terminal signature 895 905 IPR004358 GO:0016310|GO:0016772
Vvi12g0816 1272 Pfam CHASE domain 386 580 IPR006189 -
Vvi12g0816 1272 MobiDBLite consensus disorder prediction 286 305 - -
Vvi12g0816 1272 SUPERFAMILY CheY-like 1129 1269 IPR011006 -
Vvi12g0816 1272 Gene3D - 1126 1271 - -
Vvi12g0816 1272 Gene3D - 969 1110 - -
Vvi12g0816 1272 SMART HKATPase_4 780 952 IPR003594 -
Vvi12g0816 1272 CDD HisKA 668 729 IPR003661 GO:0000155|GO:0007165
Vvi12g0816 1272 ProSiteProfiles Histidine kinase domain profile. 675 952 IPR005467 -
Vvi12g0816 1272 Gene3D - 637 731 - -
Vvi12g0816 1272 FunFam Histidine kinase 4 640 731 - -
Vvi12g0816 1272 ProSiteProfiles Response regulatory domain profile. 976 1108 IPR001789 GO:0000160
Vvi12g0816 1272 Pfam Response regulator receiver domain 1133 1265 IPR001789 GO:0000160
Vvi12g0816 1272 CDD REC_hyHK_CKI1_RcsC-like 1133 1265 - -
Vvi12g0816 1272 CDD HATPase_EvgS-ArcB-TorS-like 785 948 - -
Vvi12g0816 1272 ProSiteProfiles CHASE domain profile. 383 607 IPR006189 -
Vvi12g0816 1272 SUPERFAMILY CheY-like 972 1109 IPR011006 -
Vvi12g0816 1272 Gene3D - 334 386 - -
Vvi12g0816 1272 Gene3D - 88 130 - -
Vvi12g0816 1272 SMART REC_2 1131 1265 IPR001789 GO:0000160
Vvi12g0816 1272 SMART HisKA_10 668 733 IPR003661 GO:0000155|GO:0007165
Vvi12g0816 1272 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 780 951 IPR003594 -
Vvi12g0816 1272 PANTHER TWO-COMPONENT HISTIDINE KINASE 278 1262 - -
Vvi12g0816 1272 FunFam Histidine kinase 4 387 614 - -
Vvi12g0816 1272 Gene3D CHASE domain 387 614 IPR042240 -
Vvi12g0816 1272 ProSiteProfiles Response regulatory domain profile. 1132 1269 IPR001789 GO:0000160
Vvi12g0816 1272 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 722 948 IPR036890 -
Vvi12g0816 1272 Pfam His Kinase A (phospho-acceptor) domain 668 733 IPR003661 GO:0000155|GO:0007165
Vvi12g0816 1272 Gene3D - 732 954 IPR036890 -
Vvi12g0816 1272 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 654 734 IPR036097 GO:0000155|GO:0007165
Vvi12g0816 1272 SMART CHASE_2 383 582 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0816 Vvi-Chr12 9317448 9325191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0816 67 1270 Miscellaneous Gene Families AT5G35750 61.909 0.0 1444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi12g0816 CHASE 6.1e-35 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0816 K14489 - vvi:100263145 2416.34