Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0815 ATGGGGACATCATCTGGGTCTAACATCCACAATCAACCTCAATCAACAATGTTGCCTCCCCGTCAGCAGCCAAGGACTGGAGGGTTGCAAACATCATTGTCGTTAGTTTCTTCCGATGGCCGTGCATCTCCTGATCCACAGGAACCCAGATCAAACTCTGATCAGGTGCGTGACTCCCCTTCGGAGAGTGCCAGTTCACGAGAAACGTGGCCCACTGCTGAGGCTGTAATGGGCAAGAAGCTGGCAAATGGGAAAACGGATAATGACATTCCTGAACAGTCAGTCATTCGCCGGTATTCTAACCTGGAGAAGCTAACTCTCCGCGACATAGCAAGAGAAAGAGTTGAAATGATTGCAGAAAGAATGCTTCTTCTGCCTGATGAGCTTCTAGAGGAGCTAAAAAGCAGGCTCCGTATTATTCTTGAAGGAAATGGTGGTTCTCAACATAGGGAGGAATTTTTGATTTTGCAGAAGCTTGTTCAGAGTAGGTCTGATTTGACTGCTAAGACCTTGATTAGAGCTCACAGGGTGCAGCTGGAAATTCTGGTTGCAATAAATACTGGTATTCAGGGATTCCTGCATCCAAATATTAGTCTGTCTCAAACTTCACTAATTGAAGTTTTCGTGTATAAGAGGTGTAGAAATATAGCATGCCAAAACCAGCTTCCTGCAGAGGATTGTACCTGTGAAGTATGCACCACTCGGAATGGCTTCTGCAACCTTTGCATGTGTGTTATCTGTAACAAGTTTGATTTTGAAGTGAATACCTGCCGTTGGATTGGTTGTGATCTGTGTTCTCATTGGACTCACACAGATTGTGCTATTCGTGATGTACTAATTTGCATGGGCCCTTCTGTTAAGAGTGGAGCAGGTGCTGGTGAGATGCTCTTCAGGTGCCGTGCTTGCAATAGAACATCAGAGCTGTTAGGCTGGGTTAAAGATGTGTTCCAACATTGTGCACCTGCATGGGACCGTGAGGCTCTGATGAGAGAACTTGATTTTGTTAGTAGAATTTTCCGTGGGAGTGAGGATACCAGAGGAAGGAAACTTTTTTGGAAGTGCGAGGAACTCATTGAAAAAATGAAAGGTGGAGTTCCTGAGTCAGCAGCTTGTAGAGTGATATTGATGCTTTTTCAAGAGCTTGAAGTGGACTCACCAAAGAACACAGAAGCTGGGGAAGGTGGACGACTGATAGCTCCTCAGGAGGCATGCAATCGAATTGCTGAGGTGGTGCAGGAGGCAGTAAGAAAAATGGAAATGGTGGCCGATGAGAAGTTGAGGATGTTCAAGAAAGCCCGTTTGGCTCTTGAGGCTTGTGACCGTGAGCTTGAGGACAAGGCAAGGGAAGTCAATGAATTGAAGTTGGAGAGGCAACGGAAGAAGCAACAGATAGATGAGTTGGAGAGCATTGTGAGACTCAAGCAGGCTGAGGCTGATATGTTTCAGCTTAAGGCTAATGAGGCAAGGCGAGAGGCTGAGCGGCTGCAGAGGATTGCTCTTGCCAAGTCAGAGAAATCAGAGGAGGAGTATGCTAGCAGATACCTGAAACTCCGGTTGAGCGAGGCTGAAGCCGAGAAGCAGTATCTGTTTGAGAAGATCAAGCTTCAGGAGAGTTCGCGTTCATCACAGAGTAATGGTGCAGGTGACTCTTCACAAATGCTGATGCTCTCAAAAATCCAGGACCTGCTGAAAAATGTTTATCATGTCCCTCCGAAGTCAGAATGCCAGCCAAGTGAACACCACCCTATCAGGTCAAATCCCTGA 1764 0.4654 MGTSSGSNIHNQPQSTMLPPRQQPRTGGLQTSLSLVSSDGRASPDPQEPRSNSDQVRDSPSESASSRETWPTAEAVMGKKLANGKTDNDIPEQSVIRRYSNLEKLTLRDIARERVEMIAERMLLLPDELLEELKSRLRIILEGNGGSQHREEFLILQKLVQSRSDLTAKTLIRAHRVQLEILVAINTGIQGFLHPNISLSQTSLIEVFVYKRCRNIACQNQLPAEDCTCEVCTTRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDVLICMGPSVKSGAGAGEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDTRGRKLFWKCEELIEKMKGGVPESAACRVILMLFQELEVDSPKNTEAGEGGRLIAPQEACNRIAEVVQEAVRKMEMVADEKLRMFKKARLALEACDRELEDKAREVNELKLERQRKKQQIDELESIVRLKQAEADMFQLKANEARREAERLQRIALAKSEKSEEEYASRYLKLRLSEAEAEKQYLFEKIKLQESSRSSQSNGAGDSSQMLMLSKIQDLLKNVYHVPPKSECQPSEHHPIRSNP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0815 587 Pfam PHD - plant homeodomain finger protein 213 336 IPR032881 -
Vvi12g0815 587 PIRSF UCP025218 17 572 - -
Vvi12g0815 587 MobiDBLite consensus disorder prediction 1 70 - -
Vvi12g0815 587 SMART PHD_3 243 303 IPR001965 -
Vvi12g0815 587 MobiDBLite consensus disorder prediction 567 587 - -
Vvi12g0815 587 Pfam Coiled-coil region of Oberon 430 563 IPR032535 -
Vvi12g0815 587 CDD PHD_OBE1_like 243 302 IPR047578 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 204 225 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 485 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 178 193 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 323 342 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 504 526 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 121 143 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 250 270 IPR004082 -
Vvi12g0815 587 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 163 178 IPR004082 -
Vvi12g0815 587 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 41 566 IPR004082 -
Vvi12g0815 587 Coils Coil 429 505 - -
Vvi12g0815 587 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0815 Vvi-Chr12 9306553 9309070 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0815 213 365 PHD Gene Family AT5G57380 29.032 1.13e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0815 - - vvi:100259651 1162.13