Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0810 ATGGCAACTTCTGCAATCCAGAGATCAGCATTCGCCGGCCAGACCGCCTTGAAGCAGCCCAATGAGCTTGTCCGGAAGGTTGGTGGCCTCGGTGGTGGCCGCATCACCATGCGCCGGACTGTTAAAAGCACCCCACAAAGCATATGGTATGGCCCAGACCGCCCCAAGTACTTGGGCCCATTCTCTGAGCAAACTCCATCATACCTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACTGCTGGGTTATCAGCAGATCCTGAGACATTCGCCAAGAACCGTGAGCTCGAGGTCATTCACTGCAGATGGGCAATGCTTGGTGCACTGGGTTGTGTCTTCCCTGAGATTCTTTCAAAGAATGGTGTCAAATTTGGTGAGGCTGTCTGGTTCAAGGCTGGAGCTCAGATCTTCTCAGAGGGCGGTCTCGACTACCTTGGCAACCCCAACCTTGTTCATGCCCAGAGCATCCTTGCAATCTGGGCCTGCCAAGTTGTGCTCATGGGATTCGTTGAAGGATACCGTGTTGGTGGAGGCCCACTTGGTGAGGGACTGGATGCAATTTACCCAGGTGGGGCTTTTGACCCACTTGGTTTGGCAGATGACCCTGATGCATTTGCAGAACTGAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGTTTTCAATGTTTGGATTCTTCGTTCAGGCTATTGTCACTGGAAAGGGCCCAATTGAGAACCTCGTTGACCACCTTGCTGATCCAGTTGCCAACAACGCATGGGCTTATGCCACCAACTTTGTCCCCGGCAAGTGA 798 0.5326 MATSAIQRSAFAGQTALKQPNELVRKVGGLGGGRITMRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANNAWAYATNFVPGK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0810 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Vvi12g0810 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Vvi12g0810 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Vvi12g0810 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009765|GO:0016020
Vvi12g0810 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0810 Vvi-Chr12 9272333 9273732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0810 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 89.434 0.0 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0810 K08913 - vvi:100254533 540.421