Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0808 ATGGCGCGGAAAAGCGATGAACGGGTCGACTGTGATGGTGATGGTGATGGGGAGTCGATTCAAGCTGGAATTCTCATCATACCCTCCTCTACCGGAAAATATGACCGGTTTTGGCTCCGGGGTTGGAACGTGGGAAGATTCATACGGCTGTGTAGGAAGGCTTCTTTGCTGAAGGCAGCCTCTCAACATGTGACTAGATTTCCTTCTGCAATAGTTCGTTTGGCTCTTGACCACAGTGATAATGGAGTTCCTTCCCCGACAACAGTGCCATTGCTGCAGTCTGAAGAACCCAATGGAGCTTCATCTGCTGGGTCTCATTTGGCCATGGAACCTCATGAAGAGCCTTCATCTTCTCCAGTGTTTCGGATGCGGCAGTCTCTACTCAGGAGATCAGCTTCATCTGCTCATCAGTCTCAATTGGCCATTGACCCTAAGAAGAGTTATACTGCTGATGAGGCTCCTTCACCCTCCGCTACGGAGCCACTGCTGCCGTCTGATTCTGCTCAGACTCATTTAACCATTGACGTTCAATCTGATAACGCAGAGGATGAGGAACTACAAAAGAATATTGCTCGGATTTTCGACGAGAATGACCTGGATTCGCTGCAAAAATTTGGTGGGGCTGAGAAACTGGCCTTGGCTTTTGGTTCTAATTTGGAGTCCGGAAAGAATACAGTGTCTGGAGAATCCATAGTCACCTACAAGAAACAAGTTCTTGTCAAAGATTTTCCAGGCTTCTTCGTCAGAGCTTGCAACAGTTATACAATCTTCCTCCTCATCATCTCGGCTTGTTTTTCTCTTGTATTTGAGATGGTAGAAAAAGGCCCCAAAAATGGGTGGCGCGATGGGGCTGCTATATTTCTCGCTGTGTTATTGATCGTCACTGTGGACTCAGTTTCTAGCTTTCGGGAAGCGAGAAAGCAGGGGAAGAACACGGAGAGAGGAATTAAAGTGACAGTAATACGAAGAGGACAGTCTGACACCATCTGTGGCATTGTGAAAGGCGACTTAGTATGCCTGGAGAAAGACCAAACAGTTCCAGCTGATGGTTTGCTGGTCAGTGGGAGCTTAGAGGTGGACGGGCGTTCGGACAAACACATAGACAGCAATCAGAATCCGTTTCTCTTTTCAGGTTCCATGGTAGTTGGGGGGCATGGCCGCATGCTAGTAACATCTGTTGGCAGTAACGTTGTGAGCTTCAAGGAGCCCCTGCTCGAAGCTCGGATCAGCAAGCCCAATACTTGTGCTGAATTTTTTTCTCTTTGTATGGCTTCCCTCATTGTTCTAGTGCTGTTTCTGCGTTTCTTGCACCGGAAACATGACTACGATGATGGTGGATCATCACAGATAAAGGGCGAAATCACTGTCCAAGGAGTGTTGAAGAATTTTGAAAGAATGCTTTTGAAACCCCGAGGGACTATCAGTATTTTGACATCTTTCCTCGCAGCAGCGGTGATAGGGATACAGCATGGGATGCCTTTTGTGATCTCCATCTCACTTGCCTACTGGAATGAGAAAAAGGCGACGGACGAGGTGGTTCCTCAAAATTTATCAGCCTGTGGCACCATGGGCCTTGTGACAGTCATCTGCATTGACCTATCTGGAGGACTAATTGGGGTAGAAGAAGCTTCTGAGATGTCAGAAGATGAGATCTCTCTGAGGCAGCAGCACCAGAGAAAAATGGAAGAAGCGGTGACGACTTTTAAAATGGCAGGAGTAGACATCAAATTGGTTTCAGGGGATGATGAGTTATCAGCCTTAATAGATAAAGCTCGTGAGCTTGGAATATATAGTGTCGGTTCAACAGATGAGGCAGTTGAAGGACAATACATCAGAAACCTCTGTGCTGATGAACTGAAAAGACGAGCCGATCAGATCAAAGTGATGGCAAAATTCCTCCCCAAGGACAAGCTTTCCTTGGTACAGTGCCTCAAAGAGAAAGGCCATGTAGTAGCCTTCTATGGAGGCTCAACAGCAAGGGATGCACTGGTACTGAAAGAAGCAGATGTAGGGATCAGTGATGAAAAGAGCACCGAGATGGCCAAAAAGAGCTCTGACATTATCATCAGATCATACGAAAGTTTCGTTTCATTGATCCCAATCTGTATGTATGGCAGATGGGCTTACTACAACATTCAAAGGTTCATCCAGCTTCAGCTGACAGTCATGGTTTCCAGCTTAGTGATAACTTCAGTTGCAACAATGGCCTTGAGGGAATCTCCAATAACCCTAATTCAGTTGATTTGGGTGAATCTGGTTACATCCATTCTAGGTGGCCTGATGCTTATAATGGAGCCACATAGCCAGGAGCTACGCACCTTCCAAGCTGCAGGCAACAGAAATGCACCAGTCATAACCAAGGCCATGTGGGTATTCATTTTGACACAAATAATATACCAGGCTTCTGTTTTGCTGGTTTTTCTCTTTAAGGGACAATCCATACCAGGCATTAACAGAAGGGTTAGAAAAGCCATAATTTTCAATAGTTTTTCCCTATGCCAAGTCTTCAACTATGTCAATGCCATGGTCCTAGAGGGGAAATGGTCTGATGGGGTTAAGCAGAAGGGCTGCTTACTGATTGCGGTGGGGACAGCGGTGGCTGTGCAGGTGCTGGTGGCTGAAATTTGGGCGAGGTTGAACTGGTTGCAGTGGGCTTTCTGTTTCCTCATTTCTGTGGTTTCATTGAGCTTGGGGTTGGCCATGAAAGCTCTTTCACCCTTCATGACCAAGTGGTCATTTAGTTCCATTTCTTCACATCTTAGGCACTCGGGATTTATGCCTTCACGCCATGATTTCTGCCTCATCGTCTTTTCATCTTTGTTTTTTCTTTTCTGA 2835 0.4631 MARKSDERVDCDGDGDGESIQAGILIIPSSTGKYDRFWLRGWNVGRFIRLCRKASLLKAASQHVTRFPSAIVRLALDHSDNGVPSPTTVPLLQSEEPNGASSAGSHLAMEPHEEPSSSPVFRMRQSLLRRSASSAHQSQLAIDPKKSYTADEAPSPSATEPLLPSDSAQTHLTIDVQSDNAEDEELQKNIARIFDENDLDSLQKFGGAEKLALAFGSNLESGKNTVSGESIVTYKKQVLVKDFPGFFVRACNSYTIFLLIISACFSLVFEMVEKGPKNGWRDGAAIFLAVLLIVTVDSVSSFREARKQGKNTERGIKVTVIRRGQSDTICGIVKGDLVCLEKDQTVPADGLLVSGSLEVDGRSDKHIDSNQNPFLFSGSMVVGGHGRMLVTSVGSNVVSFKEPLLEARISKPNTCAEFFSLCMASLIVLVLFLRFLHRKHDYDDGGSSQIKGEITVQGVLKNFERMLLKPRGTISILTSFLAAAVIGIQHGMPFVISISLAYWNEKKATDEVVPQNLSACGTMGLVTVICIDLSGGLIGVEEASEMSEDEISLRQQHQRKMEEAVTTFKMAGVDIKLVSGDDELSALIDKARELGIYSVGSTDEAVEGQYIRNLCADELKRRADQIKVMAKFLPKDKLSLVQCLKEKGHVVAFYGGSTARDALVLKEADVGISDEKSTEMAKKSSDIIIRSYESFVSLIPICMYGRWAYYNIQRFIQLQLTVMVSSLVITSVATMALRESPITLIQLIWVNLVTSILGGLMLIMEPHSQELRTFQAAGNRNAPVITKAMWVFILTQIIYQASVLLVFLFKGQSIPGINRRVRKAIIFNSFSLCQVFNYVNAMVLEGKWSDGVKQKGCLLIAVGTAVAVQVLVAEIWARLNWLQWAFCFLISVVSLSLGLAMKALSPFMTKWSFSSISSHLRHSGFMPSRHDFCLIVFSSLFFLF* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0808 944 Gene3D - 560 700 IPR023214 -
Vvi12g0808 944 MobiDBLite consensus disorder prediction 132 167 - -
Vvi12g0808 944 Pfam E1-E2 ATPase 317 501 - -
Vvi12g0808 944 PANTHER CATION TRANSPORTING ATPASE 558 905 - -
Vvi12g0808 944 Gene3D - 295 397 - -
Vvi12g0808 944 PRINTS P-type cation-transporting ATPase superfamily signature 655 674 - -
Vvi12g0808 944 PRINTS P-type cation-transporting ATPase superfamily signature 678 690 - -
Vvi12g0808 944 PRINTS P-type cation-transporting ATPase superfamily signature 222 236 - -
Vvi12g0808 944 PRINTS P-type cation-transporting ATPase superfamily signature 571 581 - -
Vvi12g0808 944 MobiDBLite consensus disorder prediction 81 101 - -
Vvi12g0808 944 Gene3D - 398 538 - -
Vvi12g0808 944 Pfam Cation transporting ATPase, C-terminus 740 903 IPR006068 -
Vvi12g0808 944 SUPERFAMILY Calcium ATPase, transduction domain A 318 396 IPR008250 -
Vvi12g0808 944 Gene3D - 701 843 - -
Vvi12g0808 944 MobiDBLite consensus disorder prediction 78 120 - -
Vvi12g0808 944 SUPERFAMILY HAD-like 527 692 IPR036412 -
Vvi12g0808 944 SUPERFAMILY Calcium ATPase, transmembrane domain M 241 905 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0808 Vvi-Chr12 9255903 9258737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0808 551 909 Primary Pumps ATPases AT3G63380 39.305 4.88e-66 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0808 K01537 - vvi:109123452 1257.66