LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0806	ATGTCGGGGGTACGCCATGAGCAGCGTGGCTGTGACGGTGGTGGTGATCGGGAACAGATTCGAGCTGGAATTCTCGTCATGCACATCCCTACCAGAAAATATCGCCGGCTTTGGCGCCGGGATTGGACCGTGAGAAGATTCGTAGCGCTGTGTAAGAAGGCTTCTATCCCAACTGGGCCCTCTTTGCTGTCAGTGGCTCCATTGTTGCAGTCTCAACAGCTGAGTAGAGCTTCTTCTGCAAGATCTATGCTGACTTATAATGATAATGGAGTTCCTTCCCTGTCGTCGGCAGTGCCATTGCTGCAGTCTGAAGAACCCAATGAAGCTTCATCTGCAGGGTCTCATTCAGCTCTGGGCGTGGACTCTGAACAACTCAATGGGGATTCGTCGGCACCCTCTCATTTGGGCGTGGACTCTGACGAGACGTCTACTGAAAATAGAGCTCCAGTACTGGAATTCTCTAAGCAAACTTCTACTGATAATGGATCTCCTTCAATGTTTCAACGGCTGCAGTCTCAGCTCAGTAGAGCTTCATCTGTGCGGTCCCAATTCGCCATTGACCCTAAGAGGACTAATATTGGTGACCATGGAGCTCCTTCACCGTCGTCAACAGTGCCATTGCTACAGTCTGAAGAACCCAATGAAGCTTCATCTGCAGGGTCTCATTCAGCTCTGGGCGTGGACTCTGAACAACTTAATGGGGATTCGTCGGCACCCTCTCATTTGGGCGTGGACTCTGACGAGACGTCTACTGAAAATAGAGCTCCAGTACTGGAATTCTCTAAGCAAACTTCTACTGATAATGGATCTCCTTCAATGTTTCAACGGCTGCAGTCTCAGCTCAGTAGAGCTTCATCTGTGCGGTCCCAATTCGCCATTGACCCTAAGAGGACTAATATTGGTGACCATGGAGCTCCTTCACCGTCGTCAACAGTGCCATTGCTACAGTCTGAAGAACCCAATGAAGCTTCATATGCAGGGTCTCATTCAGCTATGGGCGTCCCTGGGCGGCCTTCAACTGATAATGGACTTGCTTCAATGTTTCCAGTGCTGCAGCCTTCATCAACTGGGTCTAATTTGACCCTTGATCTGAAGAACACTTCTACTGGTAATGGATCTCCTTCAGTGTTGCGGGTGTGGGAGTCTCAATTCAGGGGATCAGCTTCATCTTCTCAGTCTCAATTGGCCATTGAACCCAAGAAGATTTATAGTACCGGTGAAGAGGCTCCTTCACCCTCCTCAATGGTGCCACTGCGGCAGTCTGAGTCTGCTCAGACTCATTCAGCCATTGACGTTCAGTCTGATAACGCAGAGGATGAGGAACTACAAAGGACTATTGCTCGGATTTTCGAAGAGAAAAACCTGAATTGGCTGCGAGAATTTGGTGGGGCTGAGAGACTGGCCTTCGCTTTTGGTTCTAATTTGGTGTCCGGAAAGAATACAGGGTTTGGAGAATCCAGAGTCACCTACAAGAAACAAGTTCTTGCCAAAGATTTTCCAGGCTTCTTCGTCAGAGCTTGCAACAGTTATACAATCTTCCTCCTAATCATCTCGGCTTGTTTTTCTCTTGTATTTGAGATGGTAGAAAAAAGCCCCAAAAACGGGTGGCATGATGGGGCTGCTACATTTCTCGCTGCATTATTCATCGTCACTATGAACTCAGGTTCTAGCTTTCGCCAAGCAAGAAAGCGGGAGAAGAACATGTTAAACGAGAGAAGAATTGAAGTGACAGTAATACGAAGCGGACAGCGTGAAACTGTCCCCATCTATGGCATCGTGAAGGGCGACTTGTTGTGCCTGCAGAAAGACCAAACAGTTCCAGCTGATGGTTTGTTGGTCTATGGTAGCATAGAGGTGGATGGGCGTTCAGACAAAAACATAGACTGCCATCAGAATCCGTTTCTTTTTTCGGGTTCCATGGTAGTTGGGGGGGATGGCCACATGCTAGTAACATCTGTTGGCAGTAACGTTGTGAGCTTCAAGGAGGCCCTGCTCGAAGCTCGGATCAGCAAGCCCAATACTTGTGCTGAATTTTTTTCTCTCTGCATGGCTTTGCTTATTGTTCTAGTGTTGTTTCTGCGCTTCTTACATAAAAAACATCACTACCATGATGGTGGATCATCAAATATAAAGGGCGAAATCACTGTCCAAGGAGTGTTGAAGATTTTTGAGAGAATGCTCTTGAAACCCCGAGGGACAATCAGCATTTTGACATCTTTCCTCGCGGCAGTGGTGATAGGGATACAGCATGGGATGCCTTTTGTGATCTCGATCTCACTCGCGTACTGGAATGAGAAAAAGGCAACGGACGATTTGGTTCCCCAAAATTTATCAGCCTGTGGCACCATGGGTCTTGTTACAGTCATCTGCATTGACCTATCTGGAGGACTAATTGGGGAAGAAGAAGCTTCTGAGATGTTAGAAGATGAGATCGATTCTGTGGGGCAAATGAAGAAAGTGGTGAGGACTTTTCAAATGGCAGGAGTAGATGTCAAATTGGTTTCAGGGGATGATGGATCGTCAGCCTTAACTAATAGAGCTCGTGAGCTAGGATTAGATATTAGTCCCGGTTCAACTGATTGGGCAGTTGAAGGCCAAGACATCAGAAACCACAACACAGATGAACTGAAAAGACTTGCCGATGGGATCAAAGTGATGGCAAAATTCCTCCCCAAGGACAAGCTTTCCATGGTACAGTGCCTCAAAGAGAATGGCCATGTAGTAGCCTTCTATGGAGGCTCAACAGCAAAGGATGCACTGGTACTGAAAGAAGCCGATGTAGGGATCAGTGATGAAAAGAGCACCGAGATGGCCAAAAAGAGCTCTGACATTATCATCAGCTCATACAAAGGTTTCATTTCATTGATCCAAATCTGGAAGTATGGAATATGGGCTTACCACAACATTCAGAAGTTCATCCAGCATCAGCTCACTGTCAATGTTTCCAGCCTAGTGATAACTTCAGTTGCAACAATGGCCTTAGGAGAATCCCCAATAACTCTAATTCAGTTGATCTGGGTGAATCTGGTTACATCCATTCTAGGTGGCTTGATGCTTATAATGGAGCCAAAAATCCAGGAACCACACACCCTCCAAGCTGCAGGTAACAGAAATGAATCAGTCATAACCAAGGCCATGTGGCTATGCATTTTGACACAAATACTATACCAGGCTTCTGTTTTGTTGGTTTTTCTCTTTAAGGGAGAAGCCATACTGGGCATTAACAGAAGGGTTATTAAAGCCATGAACGGAAGGGTTATTAAAGCCATGATTTTCAATAGTTTCGCCCTGTGCCAAGTCTTCAACTATGTCAATGCCATGGACCTAGAGAAGAAATGGTCTGGTCAGGTTAAGCAAAAGGGCTGCTTACTGGTTGCGGAGGGGGCAGCGGTGGCTGTGCAGGTACTGGTGGCTGAAATTTGGGCGAGGTTGAACTGGGTGCAGTGGGCTTTCTGTTTCCTCATTGCTGCCCTTTCATGGGGCTTGGGGTTGGCCATGAAAGCTCTTTCACCCTTCATGATCAACTGTTCGTTTATTTCCATTACTTCACATCTTAGGCACTCGGGATGGATGCCTTCACGCCATGATTTCTGCTTCATCATCTTTTCGTCATTGTTTTTTCTTTTCTGA	3630	0.4678	MSGVRHEQRGCDGGGDREQIRAGILVMHIPTRKYRRLWRRDWTVRRFVALCKKASIPTGPSLLSVAPLLQSQQLSRASSARSMLTYNDNGVPSLSSAVPLLQSEEPNEASSAGSHSALGVDSEQLNGDSSAPSHLGVDSDETSTENRAPVLEFSKQTSTDNGSPSMFQRLQSQLSRASSVRSQFAIDPKRTNIGDHGAPSPSSTVPLLQSEEPNEASSAGSHSALGVDSEQLNGDSSAPSHLGVDSDETSTENRAPVLEFSKQTSTDNGSPSMFQRLQSQLSRASSVRSQFAIDPKRTNIGDHGAPSPSSTVPLLQSEEPNEASYAGSHSAMGVPGRPSTDNGLASMFPVLQPSSTGSNLTLDLKNTSTGNGSPSVLRVWESQFRGSASSSQSQLAIEPKKIYSTGEEAPSPSSMVPLRQSESAQTHSAIDVQSDNAEDEELQRTIARIFEEKNLNWLREFGGAERLAFAFGSNLVSGKNTGFGESRVTYKKQVLAKDFPGFFVRACNSYTIFLLIISACFSLVFEMVEKSPKNGWHDGAATFLAALFIVTMNSGSSFRQARKREKNMLNERRIEVTVIRSGQRETVPIYGIVKGDLLCLQKDQTVPADGLLVYGSIEVDGRSDKNIDCHQNPFLFSGSMVVGGDGHMLVTSVGSNVVSFKEALLEARISKPNTCAEFFSLCMALLIVLVLFLRFLHKKHHYHDGGSSNIKGEITVQGVLKIFERMLLKPRGTISILTSFLAAVVIGIQHGMPFVISISLAYWNEKKATDDLVPQNLSACGTMGLVTVICIDLSGGLIGEEEASEMLEDEIDSVGQMKKVVRTFQMAGVDVKLVSGDDGSSALTNRARELGLDISPGSTDWAVEGQDIRNHNTDELKRLADGIKVMAKFLPKDKLSMVQCLKENGHVVAFYGGSTAKDALVLKEADVGISDEKSTEMAKKSSDIIISSYKGFISLIQIWKYGIWAYHNIQKFIQHQLTVNVSSLVITSVATMALGESPITLIQLIWVNLVTSILGGLMLIMEPKIQEPHTLQAAGNRNESVITKAMWLCILTQILYQASVLLVFLFKGEAILGINRRVIKAMNGRVIKAMIFNSFALCQVFNYVNAMDLEKKWSGQVKQKGCLLVAEGAAVAVQVLVAEIWARLNWVQWAFCFLIAALSWGLGLAMKALSPFMINCSFISITSHLRHSGWMPSRHDFCFIIFSSLFFLF*	1210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0806	1209	Gene3D	-	659	801	-	-
	Vvi12g0806	1209	Gene3D	-	817	957	IPR023214	-
	Vvi12g0806	1209	SUPERFAMILY	HAD-like	805	1015	IPR036412	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	405	437	-	-
	Vvi12g0806	1209	SUPERFAMILY	Calcium ATPase, transduction domain A	575	656	IPR008250	-
	Vvi12g0806	1209	Gene3D	-	542	658	-	-
	Vvi12g0806	1209	PRINTS	P-type cation-transporting ATPase superfamily signature	912	931	-	-
	Vvi12g0806	1209	PRINTS	P-type cation-transporting ATPase superfamily signature	935	947	-	-
	Vvi12g0806	1209	PRINTS	P-type cation-transporting ATPase superfamily signature	827	837	-	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	303	324	-	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	196	293	-	-
	Vvi12g0806	1209	Pfam	E1-E2 ATPase	574	761	-	-
	Vvi12g0806	1209	PANTHER	CATION TRANSPORTING ATPASE	817	1169	-	-
	Vvi12g0806	1209	SUPERFAMILY	Calcium ATPase, transmembrane domain M	497	1169	IPR023298	-
	Vvi12g0806	1209	Gene3D	-	958	1159	-	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	103	336	-	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	407	432	-	-
	Vvi12g0806	1209	MobiDBLite	consensus disorder prediction	103	186	-	-
	Vvi12g0806	1209	Pfam	Cation transporting ATPase, C-terminus	997	1168	IPR006068	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0806	Vvi-Chr12	9239820	9243449	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0806	397	654	Primary Pumps ATPases	AT3G63380	31.022	1.49e-23	106

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0806	K01537		-	vvi:109123452	2248.4