Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0805 ATGGCTTGGGGGCTTGGAATATCTAGTCCTGGTTCAACCAAGGCAGCACTTGAAGCCCAGGAGTTTAGGAAACTGTCCCCTGATGCAATGGTGGAGAAAGTTGATCAGATCACCATGGTGGGAAGTTTGTGCCCCGAGGATAAGCTTCTCATGATAAAGTCCTTGAAGCAAAAAGACAATGTAGTAGGATTCATTGGAGGATGGACGACAAGGGATACACCAGTTTTGCAAGAAGCTGATGTAGGGATCACCATTGCAACTTGGAGCACAGAAATGACCAAAGAGATTTGTGATATTGTTCTCACTTCAGGCAGCACTTAA 321 0.4548 MAWGLGISSPGSTKAALEAQEFRKLSPDAMVEKVDQITMVGSLCPEDKLLMIKSLKQKDNVVGFIGGWTTRDTPVLQEADVGITIATWSTEMTKEICDIVLTSGST* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0805 106 Gene3D - 1 103 IPR023214 -
Vvi12g0805 106 PANTHER CATION TRANSPORTING ATPASE 5 102 - -
Vvi12g0805 106 SUPERFAMILY HAD-like 15 104 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0805 Vvi-Chr12 9215002 9215322 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0805 6 101 Primary Pumps ATPases AT3G22910 39.394 3.39e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0805 K01537 K01531 vvi:100251010 139.428