Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0800 ATGCAAGCATCTCAGCAGCATAGAAGTTCAGGCATGTCTAACAGGTTGTATTACCTACCTCCGCAAGAGGCTGAGGCCCATTGCTTGCCTCAGTTCCAGAGTTTTGACCACCAGCTGTGCTACAACGATGGCAGCCAAGGAACCAACTTCTCCTTTCAGGGTTCCAGTGAGCGTTACTGTACTCTGGAGTCATCGTCTGCCACTGGCAGTTATGCCATTTACAACTCCCCATCTACTGTTAGTTTTTCCCCCAATGGAAGTCCCAACTCCCAGCAAGATTCTCAGTCGTATCCGTCTGATCCTCACCATTCCCCCGACAACACCTACGGCTCTCCTATGAGTGCATCCTGTATTACTGATGATGTAAGCGACCTGAAGCACAAGCTGAGAGAATTGGAGACTGTAATGCTGGGGCCTGATTCTGATATCATCAATAGCTATGACAGTACCTTCACCCCCAACAAGTCTTCACTGGAGATGGATAGCTGGAGAGATACAATGGAGATGATCTCTGGAGGGGACTTGAAACAGATTCTTGTAGCCTGCGCAAAGTCGGTATCAGATAATGATCTGCTGATGGCCCAATGGCTGATGGATGAGTTGCGGCAGATGGTGTCGGTCTCTGGTGAACCGATCCAAAGGCTGGGAGCTTACATGTTGGAAGGGCTTGTAGCACGGCTGGCCTCCTCCGGGAGTTCCATCTACAAAGCTCTGAGATGCAAAGAACCGGCCAGCGCTGACCTTCTCTCGTATATGCACATTCTGTATGAGGTCTGCCCCTACTTCAAGTTCGGATACATGTCTGCGAATGGTGCCATTGCAGAAGCCATGAAGGATGAAAACAGGGTTCATATTATCGACTTCCAGATTGGTCAGGGGAGCCAATGGATTACTCTAATCCAGGCCTTTTCAGCTCGGCCTGGGGGGCCACCCCACATCCGCATAACAGGTATCGACGATTCAACATCTGCTTATGCCCGTGGCGGGGGACTCAACATTGTGGGACAAAGGCTATCCAGGCTTGCTGAGTCAGTCAAAGTTCCATTCGAGTTCCATGCAGCAGACATGTCCGGCTGTGAAGTCCAGCTGGAAAATCTCGGGGCTCGACCAGGTGAAGCGTTGGCGGTGAATTTTGCCTTCATGCTGCATCACATGCCGGATGAGAGTGTCAGCACCCAGAATCACCGGGACAGGCTACTGAGGCTGGTCAAGAGCTTATCTCCCAAGGTGGTCACCCTCGTTGAGCAAGAATCAAACACAAATACCGCTGCATTCTTCCCCAGGTTCCTTGAGACATTGAATTATTATACAGCCATGTTCGAATCAATTGACGTGACTCTTCCAAGGGAGCATAAGAAGCGGATAAGCGTCGAGCAACACTGCCTGGCAAGGGATGTTGTTAACATAATCGCATGCGAGGGGGTTGAGAGGGTGGAGCGCCATGAACTTCTCGGAAAATGGAGGTTGAGGTTTGCAATGGCGGGGTTTACTCCATACCCATTAAGCTCCCTGGTGAACGCCACCATTAAAAGACTTCTAGAAAACTACAGTGACAAGTATAGGCTCGAGGAGAGGGAAGGAGCGCTCTATCTTGGCTGGATGGACAGAGATTTGGTTGCGTCGTGTGCGTGGAAGTAG 1638 0.5061 MQASQQHRSSGMSNRLYYLPPQEAEAHCLPQFQSFDHQLCYNDGSQGTNFSFQGSSERYCTLESSSATGSYAIYNSPSTVSFSPNGSPNSQQDSQSYPSDPHHSPDNTYGSPMSASCITDDVSDLKHKLRELETVMLGPDSDIINSYDSTFTPNKSSLEMDSWRDTMEMISGGDLKQILVACAKSVSDNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPASADLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFSARPGGPPHIRITGIDDSTSAYARGGGLNIVGQRLSRLAESVKVPFEFHAADMSGCEVQLENLGARPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPREHKKRISVEQHCLARDVVNIIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKRLLENYSDKYRLEEREGALYLGWMDRDLVASCAWK* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0800 545 MobiDBLite consensus disorder prediction 81 113 - -
Vvi12g0800 545 Coils Coil 506 526 - -
Vvi12g0800 545 ProSiteProfiles GRAS family profile. 166 545 IPR005202 -
Vvi12g0800 545 Pfam GRAS domain family 175 545 IPR005202 -
Vvi12g0800 545 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 133 540 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0800 Vvi-Chr12 9123172 9124809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0800 55 545 GRAS Transcription Factor Family AT5G48150 71.429 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi12g0800 GRAS 6.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0800 - - vvi:100261403 1091.64