Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0799 ATGGGTACTTCAATGGAAGGTGTTCAAGATGATGTTGCTTCTGATAAATTGCAGCAGAGGCAGAGCCTCAATGCAGGGGTTAATGCATCTCAATCTGTTCAAGAAGTGACTGATCCTATAATACCTGAGAAAGCATCAGAAGCGGAATTGAATCCATCTTTTGCTGCTTCAAGTTCACAAGTTGACATGGGTACTTCAGGGGAAGGTGCGGCAGATGATGTTGATTCTAATAAATTGCAGCAGAGACAAATTCCTGATACAGGGGTCCATGCATCACAATCTCATCAAGAAGCAATCATGCCCTCCATCATACCTGAGAAGGCATCAGAAGATGGATACAACTGGCGAAAGTATGGGCAAAAGCATGTTAAAGGAAATGAGTTTATTCGTAGCTATTACAGATGTACACATCCTAACTGCCAAGTGAAAAAGCAACTGGAACGCTCCCATGATGGGCAAATAACTGATATTATTTATTTTGGTAAGCATGATCACCCTAAACTTCAAGTTGATCTTCCGTTGGCTGTTGGCCTTGTTGTCCCTGTCCAAGAAGAAAGACCAAAGGAGCCATCATCAACTGTCGTGGAAGAAAAATCTTTGGATGGGGATGGCCAGACATCTTGTCAAATTGAGCCAGTGGATGCCCCCCAACCTGCTATTGCAGTCAGTGATGATTGTGTGGATCGTGCTCTTGCAGTATGGAGCAGGACAAGAGATGAGACTGATAATGATGATGATCCTGACTCAAAAAGACAGAAGAAAGACATTAATAATGTCGATGCCACTCCGACCGATAAGCCAAGTGGTGAACCGCGCATTGTTGTTCAGACTGTGAGTGAGGTAGATATTGTGAATGATGGGTACCGCTGGCGGAAATATGGTCAGAAATTAGTGAAAGGCAATACAAATCCAAGGAGTTATTACAGGTGCTCAAATGCAGGATGTCCAGTAAAAAAGCATGTGGAGAGGGCATCTCATGATCCAAAAATGGTTATAACCACATATGAAGGACAACACGACCATGATATGCCTCCAGCAAGGACAGTTACCCATAATTCAGCAGGACCCAATACCACTACAACAGATGTGAATGACGAATCAAGAGCTAAATCAGAACAAAGCGACAATGTTGGCCTTGCAATAGTGCCCTATATATGTTTGGGGCCTGAGAATAATAAATCAAACGATCAACAAACTCCAAGTGCAGAACCTGTCCAGACCTAA 1224 0.4314 MGTSMEGVQDDVASDKLQQRQSLNAGVNASQSVQEVTDPIIPEKASEAELNPSFAASSSQVDMGTSGEGAADDVDSNKLQQRQIPDTGVHASQSHQEAIMPSIIPEKASEDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQVKKQLERSHDGQITDIIYFGKHDHPKLQVDLPLAVGLVVPVQEERPKEPSSTVVEEKSLDGDGQTSCQIEPVDAPQPAIAVSDDCVDRALAVWSRTRDETDNDDDPDSKRQKKDINNVDATPTDKPSGEPRIVVQTVSEVDIVNDGYRWRKYGQKLVKGNTNPRSYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHDMPPARTVTHNSAGPNTTTTDVNDESRAKSEQSDNVGLAIVPYICLGPENNKSNDQQTPSAEPVQT* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0799 407 MobiDBLite consensus disorder prediction 237 260 - -
Vvi12g0799 407 MobiDBLite consensus disorder prediction 198 212 - -
Vvi12g0799 407 SUPERFAMILY WRKY DNA-binding domain 276 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 SUPERFAMILY WRKY DNA-binding domain 106 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 ProSiteProfiles WRKY domain profile. 104 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 SMART WRKY_cls 284 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 SMART WRKY_cls 109 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 MobiDBLite consensus disorder prediction 347 407 - -
Vvi12g0799 407 MobiDBLite consensus disorder prediction 1 76 - -
Vvi12g0799 407 ProSiteProfiles WRKY domain profile. 279 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 MobiDBLite consensus disorder prediction 183 215 - -
Vvi12g0799 407 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 59 367 IPR044810 GO:0003700
Vvi12g0799 407 FunFam WRKY transcription factor 95 169 - -
Vvi12g0799 407 MobiDBLite consensus disorder prediction 51 65 - -
Vvi12g0799 407 MobiDBLite consensus disorder prediction 390 407 - -
Vvi12g0799 407 Pfam WRKY DNA -binding domain 110 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 Pfam WRKY DNA -binding domain 285 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 MobiDBLite consensus disorder prediction 14 37 - -
Vvi12g0799 407 Gene3D WRKY domain 97 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 MobiDBLite consensus disorder prediction 350 364 - -
Vvi12g0799 407 FunFam WRKY transcription factor 57 270 344 - -
Vvi12g0799 407 Gene3D WRKY domain 271 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g0799 407 MobiDBLite consensus disorder prediction 237 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0799 Vvi-Chr12 9117931 9122377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0799 89 398 WRKY Transcription Factor Family AT4G26640 51.603 4.19e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi12g0799 WRKY 3.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0799 - K18834 vvi:100256306 827.394