Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0796 ATGCCATCGGCAAGTCTCAATTCATCTGATCATGACACAGAACCATTTGTTGAGGTTGATCCCACTGGTCGATATGGCCGGTACAGTGACCTGCTGGGTCATGGTGCAGTGAAGAAGGTTTATCGGGCATTTGATCAGGAGGAAGGCATTGAGGTTGCTTGGAATCAGGTCCAGTTGAGGAATTTCAGTGAAGATAAGTCAATGGTTGACCGACTTCACTCAGAGGTTAAGCTGCTGAGCACATTGAAGAATGAGAGCATAATTGTGTTGTACAGTGTTTGGAAGGACAATGAACATAACACATTGAACTTCATCACTGAGGTATGCACATCGGGGAATCTGAGGGATTATAGGAAGAGGCATCGCCATGTGTCCATTAAAGCCTTGAAAAAATGGTCAAGGCAAGTACTTAAGGGTTTGGAGTATCTCCATACTCACGACCCTTGCATCATTCACCGAGATCTCAACTGCAGTAACATCTTTATCAATGGAAACATCGGTCAGGTGAAAATTGGTGATCTGGGGTTGGCAGCCATTGTGGGGAAGAACCACTTAGCACATTCAGTACTGGGAACACCAGAGTACATGGCGCCAGAGCTGTACGAGGAGGATTACACTGAGATGGTGGACATCTACTCATTTGGAATGTGCTTGCTGGAGATGGTCACAATGGAGATTCCTTACAGTGAGTGCGACAACATTGCCAAGATATACAAAAAGGTGACAAGCGGAGTAGGGCCCTTAGCCATGAACAAGGTGTCAGACCCAGAAGTGAAGTTCTTCATTGAGAAATGCATAGCCCAGCCAAGGGCAAGACCTTCAGCCTCTGAGCTCCTCAATGACCCTTTCTTCTCTGAACTCAATGATGGAGATGCTACCATCATTGATGGACAAGCTATCCAGTGA 906 0.4614 MPSASLNSSDHDTEPFVEVDPTGRYGRYSDLLGHGAVKKVYRAFDQEEGIEVAWNQVQLRNFSEDKSMVDRLHSEVKLLSTLKNESIIVLYSVWKDNEHNTLNFITEVCTSGNLRDYRKRHRHVSIKALKKWSRQVLKGLEYLHTHDPCIIHRDLNCSNIFINGNIGQVKIGDLGLAAIVGKNHLAHSVLGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDNIAKIYKKVTSGVGPLAMNKVSDPEVKFFIEKCIAQPRARPSASELLNDPFFSELNDGDATIIDGQAIQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0796 301 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Vvi12g0796 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 288 - -
Vvi12g0796 301 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0796 301 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Vvi12g0796 301 CDD STKc_WNK 24 284 - -
Vvi12g0796 301 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Vvi12g0796 301 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vvi12g0796 301 SUPERFAMILY Protein kinase-like (PK-like) 20 284 IPR011009 -
Vvi12g0796 301 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0796 Vvi-Chr12 9089549 9091270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0796 10 284 MAP Kinase Kinase Kinase AT5G55560 79.636 6.10e-176 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vvi12g0796 Pkinase 4.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0796 K08867 - vvi:100259620 614.764