Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0792 ATGCAATCCGATCTTGGCAAGTTATTTATCGGTGGAATTTCTTGGGATACAAATGAAGATCGTCTCAAGGACTATTTTAGCAATTATGGGGAGGTGGTGGAAGCAGTAATTATGAAGGATCGGACTACCGGTCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCCGACCCAGCTGTTGCTGAGAGAGTCATTAAAGAAAAGCATAATATTGATGGTAGGATGGTTGAGGCGAAAAAGGCTGTTCCAAAGGATGACCAGAGCATTCTGAGTAGAAACAGTGGTAGCATTCATGGTTCTCCTGGTCCAGGACGGACAAGAAAGATATTTGTGGGAGGGTTAGCATCAACAGTCACAGAAAGTGACTTTAAGAAGTATTTTGATCAGTTTGGGGCAATCACAGATGTTGTGGTGATGTATGACCACAACACGCAGAGGCCAAGAGGCTTTGGGTTCATTACTTATGAATCGGAGGAAGCAGTGGATAAAGTGCTGCTCAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTGAAGCGTGCAGTACCCAAAGAGTTGTCGCCAGGTCCAATCCGGAGTCAACTTGGGGGATTTAACTATGGTCTGAGCAGGGTTAATAGCTTCCTTAGTGCCTACAATCAGGGATATGCTCCAAGCACAGTTGGAGGCTATGGAGTTAGGATGGATGGTAGATTCAGTCCAATAGCAGGTGGTCGAAGTGGGTTTCCTCCTTTTGGTTCTGGGTATGGAATGGGTATGAATTTTGAGCCAGGTTTGAGCCAAAGCTATGGGGGCAGTGCAAACTTCAATAATAATCTCAACTATGGACGGGGATTGAACCCTTATTATATTGGTAATACAAATAGATTTAATAGTACTATTGGGTATGATGGGGGTAATGGAGGGAACTCTTCCTTTTTCAGCTCGGCGACTCGGAATTTGTGGGGTAATGGGGGCCTTAATTTTGGAACAAACTCAGCAACTTCCAGTGCTTTCACAGGATCTGCAAGTGGGACCACCGGAGGAGGTGCCTTTGGCAACAGTGGAACTAGTTGGGGGTCTTCGCTGATTTCAGCTCAAGGTGGAGGAAGTAATATTTCTAGCAATAGTGGAAATCTTGGTTATGGAGGTGGTGACAGCAGCTATGGTTTGGGAGTGGGAGGGTATGGAAGAAACAGTGGAACCAGTGTAGCTCCAACCTCATCATATGCTGCATCAAACAGTGGCTATGACGGGGCCTTGGCAGAGTTCTATAGTGGTGGTTCAGTTTATGGGGACTCAACTTGGCGACCATCAAATGCCGAGCGAGATGGATCTGGTTCCTTTGGTTATGGGCTTGGCAATGCTGCTTCCGATGTTCCGGCTAAAAGTTCTCCTGGTTATGTTGGTGGTTATAGTGTTACTAAAAGACAGTCAAATAGAGGAATTGCTGCTTAG 1437 0.4544 MQSDLGKLFIGGISWDTNEDRLKDYFSNYGEVVEAVIMKDRTTGRARGFGFVVFADPAVAERVIKEKHNIDGRMVEAKKAVPKDDQSILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGAITDVVVMYDHNTQRPRGFGFITYESEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPIRSQLGGFNYGLSRVNSFLSAYNQGYAPSTVGGYGVRMDGRFSPIAGGRSGFPPFGSGYGMGMNFEPGLSQSYGGSANFNNNLNYGRGLNPYYIGNTNRFNSTIGYDGGNGGNSSFFSSATRNLWGNGGLNFGTNSATSSAFTGSASGTTGGGAFGNSGTSWGSSLISAQGGGSNISSNSGNLGYGGGDSSYGLGVGGYGRNSGTSVAPTSSYAASNSGYDGALAEFYSGGSVYGDSTWRPSNAERDGSGSFGYGLGNAASDVPAKSSPGYVGGYSVTKRQSNRGIAA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0792 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vvi12g0792 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Vvi12g0792 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vvi12g0792 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Vvi12g0792 478 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Vvi12g0792 478 MobiDBLite consensus disorder prediction 464 478 - -
Vvi12g0792 478 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Vvi12g0792 478 CDD RRM2_Hrp1p 107 184 - -
Vvi12g0792 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vvi12g0792 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vvi12g0792 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vvi12g0792 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Vvi12g0792 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Vvi12g0792 478 Gene3D - 103 188 IPR012677 -
Vvi12g0792 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vvi12g0792 478 Gene3D - 6 88 IPR012677 -
Vvi12g0792 478 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0792 Vvi-Chr12 9070744 9075873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0792 8 218 Eukaryotic Initiation Factors Gene Family AT2G36660 29.730 5.31e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0792 K14411 - vvi:100246008 853.973