Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0745 ATGGCCGATGCCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATGCTTATGTAGGTGATGAAGCCCAGTCAAAAAGAGGTATCCTCACCTTGAAATACCCAATTGAGCATGGCATTGTCAGCAATTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTATAATGAGCTTCGTGTTGCTCCTGAGGAGCACCCAGTACTTCTTACAGAAGCTCCTCTCAACCCCAAGGCTAATAGGGAGAAAATGACCCAGATTATGTTTGAGACCTTCAACGTACCTGCCATGTATGTTGCTATCCAAGCTGTGCTGTCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCGTGACCTTACAGATGCCTTGATGAAGATCCTTACCGAGAGAGGATACTCTTTCACCACAACGGCGGAACGGGAAATCGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTTGACTATGAGCAGGAGTTGGAGACCGCCAAGAGCAGTTCTGCAGTTGAGAAAAGCTATGAGCTTCCTGATGGGCAAGTGATAACTATTGGTGCTGAGAGGTTCCGCTGCCCTGAAGTCCTTTTCCAGCCATCTCTAATTGGAATGGAAGCAGCCGGAATCCACGAAACTACCTACAATTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTGTACGGAAACATTGTGCTCAGTGGAGGCTCAACCATGTTCCCAGGAATTGCTGACAGGATGAGCAAGGAAATTACTGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTGGTGGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATATTAGCATCTCTCAGCACATTCCAACAGATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAA 1134 0.4824 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0745 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vvi12g0745 377 Gene3D - 140 340 - -
Vvi12g0745 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vvi12g0745 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Vvi12g0745 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Vvi12g0745 377 PRINTS Actin signature 51 62 IPR004000 -
Vvi12g0745 377 PRINTS Actin signature 238 254 IPR004000 -
Vvi12g0745 377 PRINTS Actin signature 63 85 IPR004000 -
Vvi12g0745 377 PRINTS Actin signature 142 161 IPR004000 -
Vvi12g0745 377 PRINTS Actin signature 28 37 IPR004000 -
Vvi12g0745 377 PRINTS Actin signature 117 130 IPR004000 -
Vvi12g0745 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Vvi12g0745 377 SMART actin_3 7 377 IPR004000 -
Vvi12g0745 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Vvi12g0745 377 PANTHER ACTIN 9 370 IPR004000 -
Vvi12g0745 377 FunFam Major actin 260 340 - -
Vvi12g0745 377 FunFam Putative actin-related protein 5 341 369 - -
Vvi12g0745 377 FunFam Actin, muscle 182 273 - -
Vvi12g0745 377 Pfam Actin 5 377 IPR004000 -
Vvi12g0745 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vvi12g0745 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Vvi12g0745 377 Gene3D - 10 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0745 Vvi-Chr12 8678877 8680698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0745 1 377 Cytoskeleton Gene Families AT5G09810 97.613 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0745 K10355 - vvi:100246825 756.903