Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0727 ATGGATGTGAATGATTCTACATTATCTGGTCATATGGCTTCAACTGAGATGGTGACTGTGTTAGAAGAATGTCGAGTCTCTCCACCTTCTAGTACTGCTGTTGATGAGAAATCTCTTCCTCTCACCTTCTTTGATATCCCATGGATACATCAGCATTTGGTTCAAAGCGTCTTCTTTTATGAATATCCTCATCCTAAGACTCACTTCATAGAGACCACCATCCCTGCCCTCAAACACTCACTGTCCCTCACTCTCAAACACTTTTATCCCTTTGCAGGGAATTTACTATTTCCTCCAAATCTTGGAAAGCCTCAAATTCATTACGCAGATGGTGATTCAGTTTCATTAACCTTTGTTGAGTCTAGTGATGATTTTTCTTATCTTACTGCAAATCACCAGCGAGATGTTGCTCGACTTCATCCTCTTATACCCCAAATGCCACCAGTGTCTGTATCAAATGACACCTTAGTAGCACCTCTTGTGGCTATTCAAGTGACTCTTTTTCCAAACTCAGGCATTTCTTTTGGGTTCACTACGAACCATGTTGTTGCAGATGGTAATACCTTTATTCGGTTTGTAAGGCTATGGGCTTCTATTAATAAATTAGGTGAAGAAAGCATGACCTTAGAGGGTGCAATCCTTCCATTCTATGACAGAACCATGGTAAAAGACTCGAACGGGGTAGGCTCAATTTTTTGGCAGCATATGGGGAAAAAAAAATTCGGAGGATACCAACCTCAGCTCCCTACCAATAACGTCCTAGGCACATTTTTATTAAGCCAAGCCCATCTTCAGCGACTCAAAAGATGGGTGATGGTCCAATGCCCAAAACTCCCCCACGTATCAAGTTTAACCGTGGCGTGTAGTTATACTTGGGCTTGCGTGGCCAAAGCTCGGGCGAGGTCGAGTGACGAAGTGGATGAGAACGAACTACAACACTTTGTTTTTCCAGTAGATTGTCGAGCCCGTTTGAACCCACCTTTACCTGAAAACTATTTTGGTAATTGCTTAGCACCATGTTTTGTGGCCATCAAAAGTACACAACTAATAGATGATGAAGATGGTTTTGTTGCTGCGGTCAATGCTATGGGAGAAGCTCTAGGAAAAACGCTTCAAAATGAGGAAGGAGTTCTGAGAGGTGCAGAGAAATGGTTGTCAGATTTGGAATCTCTAAACAAAGAGCGAACCCTTGGGGCGTCTGCATCACCAAAGTTTGCAGTTTACAATATAGATTTTGGTTTCGGCCGATTACAAAAGAGAGAAATGATATCGATAGATGAAACAAACAGTATTTCGCTTCATGAAGGAAAAACTAATATGGGAGATATTGAGGTTGGGGTGGCATTACCTAAGATGACGATGGATGTTTTCGCCTCTATTTTTGCCAATGGTCTCAAAGTCTATGATTAG 1410 0.4191 MDVNDSTLSGHMASTEMVTVLEECRVSPPSSTAVDEKSLPLTFFDIPWIHQHLVQSVFFYEYPHPKTHFIETTIPALKHSLSLTLKHFYPFAGNLLFPPNLGKPQIHYADGDSVSLTFVESSDDFSYLTANHQRDVARLHPLIPQMPPVSVSNDTLVAPLVAIQVTLFPNSGISFGFTTNHVVADGNTFIRFVRLWASINKLGEESMTLEGAILPFYDRTMVKDSNGVGSIFWQHMGKKKFGGYQPQLPTNNVLGTFLLSQAHLQRLKRWVMVQCPKLPHVSSLTVACSYTWACVAKARARSSDEVDENELQHFVFPVDCRARLNPPLPENYFGNCLAPCFVAIKSTQLIDDEDGFVAAVNAMGEALGKTLQNEEGVLRGAEKWLSDLESLNKERTLGASASPKFAVYNIDFGFGRLQKREMISIDETNSISLHEGKTNMGDIEVGVALPKMTMDVFASIFANGLKVYD* 470
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0727 469 Gene3D - 17 242 IPR023213 -
Vvi12g0727 469 Gene3D - 248 468 IPR023213 -
Vvi12g0727 469 PANTHER - 18 466 - -
Vvi12g0727 469 Pfam Transferase family 17 459 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi12g0727 Vvi-Chr12 8295315 8296724 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0727 46 457 Monolignol Biosynthesis Gene Families AT5G48930 26.389 7.92e-20 89.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0727 - K12936 vvi:100249426 932.554