Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0716 ATGGGGAGAGCACCTTGCTGTGATAAAAATGGACTCAAGAAAGGTCCATGGACCCCTGAGGAAGATGATAAGCTCAGCCATTATATCCAGCTGCATGGCCCTGGCAACTGGAGAACTCTTCCAAAGAATGCTGGGCTACAAAGATGTGGGAAGAGTTGCCGTCTTCGATGGACTAATTACTTGAGACCTGATATAAAGAGAGGAAGATTCTCATTTGAAGAAGAGGAGACAATAATTCAATTACACAGTATTCTTGGAAACAAGTGGTCAGCAATTGCAGCTCGCTTGCCCGGAAGGACCGACAACGAAATCAAGAATTACTGGAACACCCATATAAGAAAGAGGCTTCTACGAATGGGAATCGATCCGGTAACACATAGTCCTCGACTCGATCTTCTGGACATATCATCTCTTCTCAGCTCATCTGTATGCAGTTCATCCCAACTCAATTTTTCGAACTTGCTTGGAATCCAAACTCTGGTAAATCCAGAACTGCTGAGACTTGCTTCCACCCTCTTGTCATTGAAACATGAAAATCCACATTTTCCACAAAATCCTCAAATTTGGAATTCCCAAGTTCAGAACCAAATCAACACCCCGCCATTGCAGTCCAATCAGTTCCACGCCACTCCAACTCAAGAAGCTGCAGCCATGCAGGCCAATACAGAAGGGCTTCCATCAAATTTGACAAACCCCAGCTACCAAAATTTCACACCCTCAAATTTTGATGAAAGCCTTGCTTCCTTACCAAACTATGGCTTCATCAATCCATCCGAAACCTCGACTTTCCAATCACTTGAGAATCAAAACAACGATCTTTATTACAACAATAACCAGGGTTTCGGCTTTGACTCGGTTATATCAACTCCGATATCGAGCCCTACTCAATTGAATTCATCGTCCACCTTCATCAACACCGGCAATGAAGATGAGAGGGAAAGCTACTGCAGCAGCATGTTGAAGTTTGAGATTCCCGAGAGTTTTAACATCAGTGAATTCATGTAA 1005 0.4348 MGRAPCCDKNGLKKGPWTPEEDDKLSHYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSLLSSSVCSSSQLNFSNLLGIQTLVNPELLRLASTLLSLKHENPHFPQNPQIWNSQVQNQINTPPLQSNQFHATPTQEAAAMQANTEGLPSNLTNPSYQNFTPSNFDESLASLPNYGFINPSETSTFQSLENQNNDLYYNNNQGFGFDSVISTPISSPTQLNSSSTFINTGNEDERESYCSSMLKFEIPESFNISEFM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0716 334 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vvi12g0716 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi12g0716 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi12g0716 334 CDD SANT 69 112 IPR001005 -
Vvi12g0716 334 FunFam Transcription factor MYB39 69 130 - -
Vvi12g0716 334 FunFam MYB-related transcription factor 13 66 - -
Vvi12g0716 334 CDD SANT 16 61 IPR001005 -
Vvi12g0716 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 - -
Vvi12g0716 334 Gene3D - 69 116 - -
Vvi12g0716 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vvi12g0716 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi12g0716 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vvi12g0716 334 SMART sant 13 63 IPR001005 -
Vvi12g0716 334 SMART sant 66 114 IPR001005 -
Vvi12g0716 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi12g0716 334 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0716 Vvi-Chr12 8194787 8195986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0716 1 334 MYB Transcription Factor Family AT4G21440 47.938 3.88e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi12g0716 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0716 K09422 - vvi:100249492 655.981