Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0711 ATGGAGTTTGATCTGGAGAACCCATTAACATCGTCCCAAGACCTCCACTCTCATGCAGTTGCTTCGCTTTTTCAAGCTGAAAATCATCACATGCCCTCCATTGACTACTGCGGAAGTCTAGACTCTGTAGATTGTGATGTTTCGTTTAGAAGACAGGCCATCTCTTCCATTTTGCAGATGTCTAGCAGCTTTGATCCGTTTCTCTCGTATCTCGCCATTAATTACCTCGATCGGTTCTTGTCCAGGAGCGAAATGCCGATTTTGCAGAGTGAAAAGCCATGGATCCTTAGGCTTCTTGCTGTCTCTTGCGTTTCTCTGGCTGCAAAGATGAAGAAAACAGAGTTTTCCCTCGCAGATTTCCAGGGCGAAGGAGGCTTCATCTTCGATTCAGAGACGATAATGCGGATGGAGATTCTTGTTCTCGGAGCCTTGAAATGGCGAATGCGCTCAGTCACTCCCTTCTCCTTCATCTCCTTCTTCATCTCCTTATTCAAACTCAAAGACCCGCCATTGCTGGAAGCTCTCAAAGCTCGAGTCATAGAGATCATCCTCAAATCCCAAAAGGAAATCAAGCTTTTGCAGTTCAAGCCATCCATCATCGCCGCATCGACCCTCCTCTACGCCTGCCACGAGCTCTTCCCACTCCAATTCCCGTGCTTCATGACCGCAATTTCCAATTGTCCATATGTAAATAAAGAAAAGATGCTGTGTTGCTACAGTGCAGTGAGGGAAATGGAGATAAAGGAGTTCGACAGCTTATACGGCGTGGTTTCGAGCTCGAGCTCGCCGGTGAATGTGCTGGACCGGCACTGCCTGAGCTCGGAGAGTGAGAAGAGCCACACAATGGGAGCAGAGAGCGACGTGAAGAGACGCAAAATCAGTGTATTTCTGTAA 894 0.4787 MEFDLENPLTSSQDLHSHAVASLFQAENHHMPSIDYCGSLDSVDCDVSFRRQAISSILQMSSSFDPFLSYLAINYLDRFLSRSEMPILQSEKPWILRLLAVSCVSLAAKMKKTEFSLADFQGEGGFIFDSETIMRMEILVLGALKWRMRSVTPFSFISFFISLFKLKDPPLLEALKARVIEIILKSQKEIKLLQFKPSIIAASTLLYACHELFPLQFPCFMTAISNCPYVNKEKMLCCYSAVREMEIKEFDSLYGVVSSSSSPVNVLDRHCLSSESEKSHTMGAESDVKRRKISVFL* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0711 297 CDD CYCLIN_AtCycD-like_rpt1 50 146 - -
Vvi12g0711 297 SUPERFAMILY Cyclin-like 14 148 IPR036915 -
Vvi12g0711 297 FunFam D6-type cyclin 33 146 - -
Vvi12g0711 297 SUPERFAMILY Cyclin-like 132 209 IPR036915 -
Vvi12g0711 297 SMART cyclin_7 55 142 IPR013763 -
Vvi12g0711 297 Gene3D - 22 240 - -
Vvi12g0711 297 SMART Cyclin_C_2 151 276 IPR004367 -
Vvi12g0711 297 Gene3D - 33 149 - -
Vvi12g0711 297 PANTHER CYCLINS 22 243 IPR039361 -
Vvi12g0711 297 Pfam Cyclin, N-terminal domain 22 148 IPR006671 -
Vvi12g0711 297 Pfam Cyclin, C-terminal domain 151 245 IPR004367 -
Vvi12g0711 297 FunFam D6-type cyclin 147 240 - -
Vvi12g0711 297 CDD CYCLIN_AtCycD-like_rpt2 151 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0711 Vvi-Chr12 8133568 8135004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0711 1 295 Core Cell Cycle Gene Families AT4G03270 50.809 4.81e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0711 K18812 - vvi:100251144 565.074