Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0710 ATGGTGAGAAACCCATGCTATGATAAGTACGGCAGAAAGAAAGGAGCATGGAGTCCTGAAGAAGATGAGAAGTTAAGAGCTTATGTTCAAAGATATGGCCATTGGAACTGGCGAGAACTTCCCAGGTTTGCAGGTCTCTCGAGATGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTACCTGCGACCTAATGTTAAGCGAGGAAACTACAGCAAAGCAGAAGAAGAAACCATCAAGAAATTACACGAAGAGCTTGGGAACAAATGGTCTGCCATAGCGAAAAAACTACCAGGAAGAACTGACAATGAGATCAAGAACTACTGGCACACCCACCTGAAGAAAAGGGAGAGGCAAAATCCGGCCAAGTCTCAAGTGGTTCGGCAACCTCCTGGAACTTCAAAACGGGAGGGTGATGATCAGAAGAGAGAACTGGAATCAGAAAATATTCATGCAGATGCTCCATCTCACTATATTTTAGAAAGCTTCTCAACGTCCCCGGAATCAGAATCATCTTCCAGCGAGATCTCCACCTTGAGCTTTGATTATACGCCAGCTGTGAATGAAATGAACTGGTTTGCAGACGAGGGTATAGCTTCATCAGAGACATTTGCAGAACCCAATGAGAATTTCTGGACCGAACCATTCTTAACAGACGATTCCTACACCCAGTATTATTATCCACCCATTAACGCCTCTCTATATGACTCATACTGCGACAATGACACAGATCTGTTCCAGGATATTTGGTCAATAAGCTAG 759 0.4427 MVRNPCYDKYGRKKGAWSPEEDEKLRAYVQRYGHWNWRELPRFAGLSRCGKSCRLRWLNYLRPNVKRGNYSKAEEETIKKLHEELGNKWSAIAKKLPGRTDNEIKNYWHTHLKKRERQNPAKSQVVRQPPGTSKREGDDQKRELESENIHADAPSHYILESFSTSPESESSSSEISTLSFDYTPAVNEMNWFADEGIASSETFAEPNENFWTEPFLTDDSYTQYYYPPINASLYDSYCDNDTDLFQDIWSIS* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0710 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi12g0710 252 CDD SANT 69 112 IPR001005 -
Vvi12g0710 252 CDD SANT 16 61 IPR001005 -
Vvi12g0710 252 MobiDBLite consensus disorder prediction 112 150 - -
Vvi12g0710 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi12g0710 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi12g0710 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 218 - -
Vvi12g0710 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi12g0710 252 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi12g0710 252 MobiDBLite consensus disorder prediction 132 150 - -
Vvi12g0710 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi12g0710 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vvi12g0710 252 SMART sant 66 114 IPR001005 -
Vvi12g0710 252 SMART sant 13 63 IPR001005 -
Vvi12g0710 252 Gene3D - 13 66 - -
Vvi12g0710 252 FunFam MYB-related transcription factor 13 66 - -
Vvi12g0710 252 Gene3D - 69 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0710 Vvi-Chr12 8125145 8126348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0710 1 220 MYB Transcription Factor Family AT2G31180 44.545 1.18e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi12g0710 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0710 K09422 - vvi:100246003 515.768