Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0709 ATGCGGTGCGGGAAGAGTTGCAGGCTGCGGTGGATGAATTATCTAAGACCAAACATCAAAAGAGGGAATTATAGCAAAGAAGAAGAAGACACCATCATCAAATTACACGCATCGCTTGGGAACAGATGGTCTGCCATTGCAGCTCAGTTACCAGGAAGAACAGACAATGAGATAAAAAACTACTGGCATACCAACCTCAAGAAACGGTTGATTAAGCAAAAGACGGCTTCCCATGAAGCAAACTTCATCTCCAATGGTCTCTCCCAACGTGAAACAAGCCAAAATAGATCTGTTGTACACCCAATTGCTTCTCAAATTCTTGAAAGCTACCCATTTTCCCCACAGCCATCCTCTAGTACTGAAACCTCATCCTCAACCACAGACAGTAGTGCTGCAGGAGGTAACAGCAGCAACTGTGCTTCATATGATTGCAGCAGCTTGGCTTCCATGGAAACGGTTGCAGAACTCAGTGGAAATTTCTGGACAGAACCATTTTTTGCAGACAACTACTACATACCAAATGATTCCATGGCTCCAATGGTGGACCCAGAGATTTTATTTCATCCCCCACTTTCTGGAGAGCTCTTGTACTCAGATGGTTTCTATAATGGACATGAAGGCTTAAGATATTGGTAA 636 0.4371 MRCGKSCRLRWMNYLRPNIKRGNYSKEEEDTIIKLHASLGNRWSAIAAQLPGRTDNEIKNYWHTNLKKRLIKQKTASHEANFISNGLSQRETSQNRSVVHPIASQILESYPFSPQPSSSTETSSSTTDSSAAGGNSSNCASYDCSSLASMETVAELSGNFWTEPFFADNYYIPNDSMAPMVDPEILFHPPLSGELLYSDGFYNGHEGLRYW* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0709 211 CDD SANT 23 66 IPR001005 -
Vvi12g0709 211 FunFam Transcription factor MYB14 23 97 - -
Vvi12g0709 211 Pfam Myb-like DNA-binding domain 21 66 IPR001005 -
Vvi12g0709 211 SUPERFAMILY Homeodomain-like 2 75 IPR009057 -
Vvi12g0709 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 136 - -
Vvi12g0709 211 SMART sant 20 68 IPR001005 -
Vvi12g0709 211 Gene3D - 1 20 - -
Vvi12g0709 211 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Vvi12g0709 211 Gene3D - 23 97 - -
Vvi12g0709 211 MobiDBLite consensus disorder prediction 109 137 - -
Vvi12g0709 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0709 Vvi-Chr12 8113452 8114197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0709 1 169 MYB Transcription Factor Family AT2G31180 44.970 1.85e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi12g0709 Myb_DNA-binding 2e-14 CL0123