Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0706 ATGGTGGTCAGTTCAAGCAGCTTGATTTTGACTTTAAATTGTGAGACTGAGACAACAACCAGCCGTTTGGTTTTCCTCCATGACCCGCATGTTAGACTTCTTCTTCCCCTCTTCTTTTGTCTCCTCTCTTTTTACACACTCGTTATAAATCCTCTGAAATCTCTTCTTTTGTTTGGGCAGAGTGGTGCAGCCATGGATACCAGAAACAACCCTTGGCTCAAGCTTTCAATTCTCTTCCTATGTCTAACTCTCAAGATCCATCTCTCCCATGGAGGTGACACCATCTCTGGAAACGAAACTCTCTCTGGGGATCAGACCCTTGTCTCTGCAGGTGGCAACTTTGTATTGGGTTTCTTCAAGCCAGGTAATTCTTCATACTATTATATAGGCATGTGGTACAAGAAAGTTTCTGAGCAGACTATAGTTTGGGTGGCGAATAGAGACACCCCTGTCACTGATAATCGTTCTTCACAGCTGAAAATATTGGATGGTAATTTAGTTCTTTTCAATGAATCCCAAGTCCCTGTTTGGTCAACCAATTTGACCTCCAATTCAACTAGCTTAGAAGCTGTTCTTTTGGATGAAGGGAACTTTGTTCTGAGAGTTACTGGGGCTGTTTCAAATGAAACAAGATGGCAGAGCTTTGATCATCCCACCCACACATGGCTTCCTGGTGCCAAGCTCGGATTGGATAAACGTACCAAAACCCCACAGCTTCTCACATCTTGGAAAAATACGGATGATCCTGCAAATGGGTTGTTTTCCCTCGAATTAGACCCAGATAGCACCTCACAGTACTTAATCCGGTGGAATAGGTCTACGCAGTACTGGTCTAGTGGGACATGGAATGGCCAAATCTTTAGCTTAGTTCCCGAAATGAGATCGAATTATATATACAATTTCAGCTTCTATTCTGATGCCAATCAGAGCTATTTTACCTATTCACTTTACGATAAGACAATTATCTCTCGATTCATTATGGATGTTTCTGGTCAGATCAAGCAATTGACTTGGTTGGATTCATCCAGTCAGTGGAATCTGTTTTGGTCTCAACCCAGGACACAATGTGAGGTCTATAACTTTTGTGGGCCTTTCGGAGTTTGCAATGATGATAATACTGATGTTTTTTGTGAATGTTTGACGGGTTTCACGCCAAGCTCTCAAAATGACTGGAATTTGGGGGATCGGTCTGCTGGGTGTAAGAGAAACACTCGTTTGCAGTGTGAAAGCAACTCGCTCAGTCAGCAGAAAGATAGGTTTTCATCTAAGCCTAACATGAGATTGCCTGAAAATCCCCAAACTGTAAATGCTGGGAGCAGATCAGCATGCGAATCGGCTTGCTTTAATAACTGCTCTTGCACTGCTTATGCCTTTGACAGTGGATGCTCCATTTGGATTGATGGCCTCATGAATCTGCAACAGCTTACCGATGGTGATAGTAGTGGAAATACTTTCTATCTGAAGCTTGCTGCTTCAGAGTTTCCAAATTCCAGCAGTGACAAGGGGAAGGTTATTGGTATTGCGGTGGGATCGGCTGCAGCCGTGTTAGCCATCTTAGGCCTTGGCTTGTTCATAATTTGGAGACGACGTAGATCGGTTGGAACTGCAAAAACAGTAGAGGGTTCATTGGTGGCATTTGGATACAGAGATTTGCAAAATGCCACGAAGAATTTCTCAGAAAAATTGGGGGGAGGAGGCTTTGGTTCTGTTTTCAAAGGGAGATTGCCGGACTCAAGTTTCATAGCTGTGAAGAAGCTTGAAAGCATCAGCCAAGGAGAGAAGCAATTCCGATCAGAAGTCAGCACTATTGGAACAATCCAGCATGTTAATCTTGTTCGACTCCGTGGATTCTGCTCAGAAGGTACGAAAAAGTTGCTGGTCTACGATTACATGCCCAATGGTTCTTTAGATGCTCATCTTTTCCATGAAAAGGATTCAGAAGTTTTGGACTGGAAGAAGAGGTACCAAATCGCGCTCGGGACTGCCAGAGGCTTGACTTATCTCCATGAGAAGTGCCGAGACTGCATCGTCCACTGTGACATAAAGCCAGAAAACATTCTTTTGGATGCTGAACTTTGCCCAAAAGTGGCAGATTTTGGCCTGGCAAAGCTTATTGGGCGTGATTTCAGCCGGGTCCTAACAACCATGAGGGGCACAAGGGGCTATCTTGCACCAGAGTGGATTTCAGGCGTAGCCATAACAGCCAAAGCTGACGTCTACAGTTATGGAATGATGCTTTTCGAGTTTATTTCAGGGAGGAGAAACTCAGAGGCTTCTGAAGATGGAAAAGTTAAATTCTTCCCAACTTTGGCTTCAAGCGTGCTAACTGAAGGAGATGATATCCTCATCCTGTTAGACCAAAGGTTGGAGAGGAATGCAGATCCAGAAGAACTAACAAGGCTCTGTAGAGTGGCTTGTTGGTGCATCCAAGATGAGGAATCTCAGAGGCCATCAATGGGTCAAGTAGTTCAGATCCTTGAGGGGGTTCTGGATGTGAACCCTCCTCCAATCCCGCGAACCCTTCAAGTTTTCGTTGACAACCAGGAGCAAATAATCTTCTTCACAGAATCATCCTCATCCTCGGGCCAGAGTTCAAAGCCACGCAGCAATGCTTCTACTGCTTCATCTCAGATCAAGAGCACCGTCTCATCAAGTTCCATTTCAGAAAAATGA 2673 0.4441 MVVSSSSLILTLNCETETTTSRLVFLHDPHVRLLLPLFFCLLSFYTLVINPLKSLLLFGQSGAAMDTRNNPWLKLSILFLCLTLKIHLSHGGDTISGNETLSGDQTLVSAGGNFVLGFFKPGNSSYYYIGMWYKKVSEQTIVWVANRDTPVTDNRSSQLKILDGNLVLFNESQVPVWSTNLTSNSTSLEAVLLDEGNFVLRVTGAVSNETRWQSFDHPTHTWLPGAKLGLDKRTKTPQLLTSWKNTDDPANGLFSLELDPDSTSQYLIRWNRSTQYWSSGTWNGQIFSLVPEMRSNYIYNFSFYSDANQSYFTYSLYDKTIISRFIMDVSGQIKQLTWLDSSSQWNLFWSQPRTQCEVYNFCGPFGVCNDDNTDVFCECLTGFTPSSQNDWNLGDRSAGCKRNTRLQCESNSLSQQKDRFSSKPNMRLPENPQTVNAGSRSACESACFNNCSCTAYAFDSGCSIWIDGLMNLQQLTDGDSSGNTFYLKLAASEFPNSSSDKGKVIGIAVGSAAAVLAILGLGLFIIWRRRRSVGTAKTVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGRLPDSSFIAVKKLESISQGEKQFRSEVSTIGTIQHVNLVRLRGFCSEGTKKLLVYDYMPNGSLDAHLFHEKDSEVLDWKKRYQIALGTARGLTYLHEKCRDCIVHCDIKPENILLDAELCPKVADFGLAKLIGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFISGRRNSEASEDGKVKFFPTLASSVLTEGDDILILLDQRLERNADPEELTRLCRVACWCIQDEESQRPSMGQVVQILEGVLDVNPPPIPRTLQVFVDNQEQIIFFTESSSSSGQSSKPRSNASTASSQIKSTVSSSSISEK* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0706 890 CDD B_lectin 98 218 IPR001480 -
Vvi12g0706 890 ProSiteProfiles PAN/Apple domain profile. 408 490 IPR003609 -
Vvi12g0706 890 Gene3D Transferase(Phosphotransferase) domain 1 631 834 - -
Vvi12g0706 890 CDD STKc_IRAK 562 828 - -
Vvi12g0706 890 ProSiteProfiles Protein kinase domain profile. 556 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0706 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 676 688 IPR008271 GO:0004672|GO:0006468
Vvi12g0706 890 Pfam S-locus glycoprotein domain 277 386 IPR000858 GO:0048544
Vvi12g0706 890 ProSitePatterns Protein kinases ATP-binding region signature. 562 585 IPR017441 GO:0005524
Vvi12g0706 890 CDD PAN_AP_plant 404 490 - -
Vvi12g0706 890 SUPERFAMILY alpha-D-mannose-specific plant lectins 127 283 IPR036426 -
Vvi12g0706 890 MobiDBLite consensus disorder prediction 856 890 - -
Vvi12g0706 890 ProSiteProfiles Bulb-type lectin domain profile. 92 213 IPR001480 -
Vvi12g0706 890 Pfam Protein kinase domain 559 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0706 890 MobiDBLite consensus disorder prediction 411 434 - -
Vvi12g0706 890 SUPERFAMILY Protein kinase-like (PK-like) 542 864 IPR011009 -
Vvi12g0706 890 FunFam Serine/threonine-protein kinase 631 834 - -
Vvi12g0706 890 PIRSF SRK 66 886 IPR024171 GO:0004674
Vvi12g0706 890 Pfam PAN-like domain 414 471 IPR003609 -
Vvi12g0706 890 SMART blect_4 98 218 IPR001480 -
Vvi12g0706 890 Pfam D-mannose binding lectin 140 244 IPR001480 -
Vvi12g0706 890 Gene3D Phosphorylase Kinase; domain 1 525 630 - -
Vvi12g0706 890 Gene3D - 87 216 IPR036426 -
Vvi12g0706 890 PANTHER OS07G0415500 PROTEIN 76 838 - -
Vvi12g0706 890 FunFam Serine/threonine-protein kinase 523 630 - -
Vvi12g0706 890 FunFam Serine/threonine-protein kinase 87 215 - -
Vvi12g0706 890 SMART ntp_6 415 489 IPR003609 -
Vvi12g0706 890 SMART serkin_6 556 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0706 Vvi-Chr12 8077219 8079891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0706 537 836 Receptor kinase-like Gene Family AT5G20050 45.886 1.91e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi12g0706 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0706 - - vvi:100240913 1605.88