Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0701 ATGAAGGGCTGCGAGCTGTGTGGATGTCCGGCGAGGATGTACTGCGAGTCGGACCAGGCGAGCTTGTGCTGGGACTGCGACGCCAAGGTTCACGGTGCGAACTTTCTGGTGGCTAGGCATTCGAGGAGTCTTCTTTGCCACGTTTGTCGGTCGCCGACGCCGTGGAGAGCTTCCGGTGCGAAGCTAGGGCACACGGTTTCGGTGTGCGAGAGGTGCGTGGACGGGTGTGGTGGAAGGAAGTGTGGAGGTGCAGCGGAGGAGAGCGAGGGAGGGAATGATGATGAGGTTGGCATGGAGGATGATGATCTCGATGAGGATGATGAGTACGACGATGACGATGATGTCGAAGATGAGGAGGAGGAAGAGGAGGAGGATGACGACTTTGGCGGTGATGATGAAGACGGTGATAATCAGGTGGTGCCATGGTCTTCTACGCCGCCTCCACCTGAGGCAAGCTCTTCGAGCAGCGAAGAGTCGTTGAACAGCTTCTCTAGCGGCAACAGAGATGTCCCTGGTTCGTTCACAATGCTTTCGCTGAAGCGAATGCGTGAAACTGCTTCAGATCTTCGCTCGCAAGACGATTTCAACCGACCGTCCTCTCAACCGAACTACGCCTCAGCGAGGGCGGCAGCGGCTCGATCCGCGGCTGACGACGGCGAAGCCATTTCTGAGGACGCCCTTAGGCCATTCAAAGACCGGAGAATAGAACAGAACCGGCCGGTCCAGCCCCAGGCCGGTTCGAGAACGGCCGAGATCGTCGACTCGCTTAACAGACTCCACAATCAAGACATAACCTCCGGCAGCGACGCGTCCTCTATAATCGCCGGCATTTGCAATCTGAGTAAACAATCTGGGGCCGTTGATCTTGATTGCTCGAGCTCTCGTAGTCGTCGGATTTGA 900 0.57 MKGCELCGCPARMYCESDQASLCWDCDAKVHGANFLVARHSRSLLCHVCRSPTPWRASGAKLGHTVSVCERCVDGCGGRKCGGAAEESEGGNDDEVGMEDDDLDEDDEYDDDDDVEDEEEEEEEDDDFGGDDEDGDNQVVPWSSTPPPPEASSSSSEESLNSFSSGNRDVPGSFTMLSLKRMRETASDLRSQDDFNRPSSQPNYASARAAAARSAADDGEAISEDALRPFKDRRIEQNRPVQPQAGSRTAEIVDSLNRLHNQDITSGSDASSIIAGICNLSKQSGAVDLDCSSSRSRRI* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0701 299 SMART bboxneu5 1 45 IPR000315 GO:0008270
Vvi12g0701 299 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Vvi12g0701 299 MobiDBLite consensus disorder prediction 149 172 - -
Vvi12g0701 299 CDD Bbox1_BBX-like 4 45 - -
Vvi12g0701 299 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 214 - -
Vvi12g0701 299 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270
Vvi12g0701 299 MobiDBLite consensus disorder prediction 218 238 - -
Vvi12g0701 299 MobiDBLite consensus disorder prediction 192 207 - -
Vvi12g0701 299 MobiDBLite consensus disorder prediction 88 134 - -
Vvi12g0701 299 MobiDBLite consensus disorder prediction 83 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0701 Vvi-Chr12 8048666 8049880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0701 2 114 C2C2-CO-like Transcription Factor Family AT4G27310 52.212 3.07e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi12g0701 zf-B_box 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0701 - - vvi:100252747 469.159