LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0698	ATGGGTTCAGTCTCTGCAGCTCACATGCTATCTATCATCTTTTTGGTGGTGTTGTGTTGTGTCCCGTTTAGCTCTGCTAGAGATTCCCTTACAACAGGCAATTGGATTGAGGATGATGGAAGTACTCTGGTTTCCATGAATGGAACTTTTGAACTGGGCTTTTTTACCCCTAATGGAAGCTTCAGCAAAGGAAGATACGTCGGCATATGGTACCACAAGTTGAAAGAGAAACCAGTTGTGTGGGTAGCCAATCGAGACCAGCCCCTCAATGCTAAGTCTGCGCGTTTCGGGATTCCACCAGATGGTAAGCTCAAGGCATGGGATGACAATCAAGTAGTCCTCTTGTATCCTGGTGAAGAGTCTGGAGTCAGAGTGGTGAAGCTCATGGACTCTGGGAACCTTGTTTTGCGTGTTAACGAATCAGGGAAGAATCTTTGGGAGAGCTTCCATAATCCTACATATACTTTTCTCCCTGAGATGAAGATGGATGAAAACTTAAGCTTGACTTCATGGGTAAGCCCCGTTGACCCTGCACCTGGAAACTATGTTTTCAAGCAAAAAAATGAGAATTTGCTTACTATATTTCAGAATCAGAATTCATCTAACATGTATTGGACAAGTGAGAAATCATGGCAAATTCCTCATTACATATATGCGTTCCTATACTACTCCAGCGAGCCCAGCAACCAGAATTTAACATTTGAAGCAGTCCCTTCACGGTTGGTAATGAATTTCACGGGGGAAATAACGTATCTAAAGTGGGATAATAGAAAGGAAGAGTGGTCTGAAATCTGGTTGGCGCGGGGAGACAGATGCAGTGTGTATAATGCTTGTGGGAATTTCGGTACCTGCAATGTTAACAATGCTATCATGTGCAAATGTCTGCCTGGATTCGTCCCAATCGAACAAGAGAAATGGAATGCAGAAGTTTTTTCAGGTGGGTGTGACAACAAGTCACCCCAGTGCGGGGACACATTCTTGAACTTGAAGATGATTAAGGTAGGAAATTACGACATGTTGGGTGAGGAAGGGAAAAACTGCAGAGAGGAGTGCAGCAAGCATTGCTGTAAAGCATATGCTGAAGTTGCTCCCAAGTGCTGGATTTGGTCTGGAAATCTCCCTAGTCTTCAGGAGGAGGATAGAGATGGCTATAATCTTTTCGTTCGTGTCCTCAGATCTGATTTAGAGTCAACAACAAGAAATTGTGAAACTTGTGGCACAAACATGATCCCCTATCCACTCAGCACTGGACCAAAATGTGGTGACCCTGAGTACTTCCGTTTCAATTGTGACAATGACACGGGCCAAGTCTCGTTCAAGGTAATTGACAGCAGCTACCGAGTAAGTAGTATCGATCCTAAGGCATTAAAATTTGTAATCCAGGTGAAAGATGCAAATTGTAGTTCTCCAAGTCTCATCCGCCAAATTCCAAAACTAAAGTCGCCTTTTAGCATGACTGGCGTGTGCAATGCTTCCAAAACTGACAAATTTAGCTCCAACTCCAAGACGACATTGAACAGTAGTGTTGAAATAGAAATCAGTTGGGATCCACCTCCAGAGCCAGAGTGTACCTTATCAGCAGACTGCAAGGATTGGCCAAATTCAAACTGCACCACTCGACGTGGAAGGAGAAAGTGCTTCTGCAATGAAAACTTCAAATGGAATGGGCAGAGTTTAAATTGTACACAAGAACATGGCAATCAGAAGTCTCTGGAAATCGTGGTAGGAATATCTGTTGCTGTTGCTCTGGTTGCACTTTTATGCACCCTTGGTTGTATTGCTTATTTGCTCAATAGAAGCATCACCAAAAGGACAGAAAACAGAGCAAATTGGGGGCGTCACTTGTATGCTAGTGACAGCCGTGTGAAACACTTAATAGACTCAGAGCAATTCAAAGAAGAGGATAAGAAAGGCATTGATGTACCGTTTTTCCACTTAGAAGACATACTGGCTGCTACTGATGACTTCTCAGATGCAAATAAACTTGGACAAGGGGGTTTTGGGCCAGTTTACAAGGGCAAGTTTTCTAAAGGGCAAGAAATGGCGATAAAGAGACTTTCCAGAGCTTCAGGACAAGGCCTGCAGGAATTTAAGAATGAGGTTGTGTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGGCCAACAAAAGCTTAGACTCCTTCATATTTGATCGAACCCTTTGCATGTTACTGAACTGGGAGAAGCGGTTTGACATCATTTTGGGAATTGCTCGAGGGCTGCTGTATCTTCACCAAGATTCAAGATTGAAGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTTGATGATGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAAGATTTTTGACAGTAAGCAAGTAGAGGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCGGAGTATGCATTGGATGGATATTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTACTTGAGATCATCAGTGGGAAGAGGAACACTGGATTTTATCAGTCTGACCAAACTCCGAGCCTTCTAGGTCATGCATGGAAGCTATGGAAAGAAGAAAAGGTTTTGGAGCTGATGGACCAGACACTAGGTGAAACATGCAACACAAACGAATTTTCGAGGTGTGTAAACGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCCATTGCAGTTCTTCTGCTCAGCAGTGACGCTGCAACAATGCCCGTTCCTAAAGAACCAGCTTTTGTTGTAAAGAGGGACCTCTCTAGAACAGCTTCTTCTTCTAGCAAGGCTGAAGCCTCCTGGAAGAATGAGCTCCTAGCCACCATAGGAGAAGGCCGATAG	2925	0.4349	MGSVSAAHMLSIIFLVVLCCVPFSSARDSLTTGNWIEDDGSTLVSMNGTFELGFFTPNGSFSKGRYVGIWYHKLKEKPVVWVANRDQPLNAKSARFGIPPDGKLKAWDDNQVVLLYPGEESGVRVVKLMDSGNLVLRVNESGKNLWESFHNPTYTFLPEMKMDENLSLTSWVSPVDPAPGNYVFKQKNENLLTIFQNQNSSNMYWTSEKSWQIPHYIYAFLYYSSEPSNQNLTFEAVPSRLVMNFTGEITYLKWDNRKEEWSEIWLARGDRCSVYNACGNFGTCNVNNAIMCKCLPGFVPIEQEKWNAEVFSGGCDNKSPQCGDTFLNLKMIKVGNYDMLGEEGKNCREECSKHCCKAYAEVAPKCWIWSGNLPSLQEEDRDGYNLFVRVLRSDLESTTRNCETCGTNMIPYPLSTGPKCGDPEYFRFNCDNDTGQVSFKVIDSSYRVSSIDPKALKFVIQVKDANCSSPSLIRQIPKLKSPFSMTGVCNASKTDKFSSNSKTTLNSSVEIEISWDPPPEPECTLSADCKDWPNSNCTTRRGRRKCFCNENFKWNGQSLNCTQEHGNQKSLEIVVGISVAVALVALLCTLGCIAYLLNRSITKRTENRANWGRHLYASDSRVKHLIDSEQFKEEDKKGIDVPFFHLEDILAATDDFSDANKLGQGGFGPVYKGKFSKGQEMAIKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMANKSLDSFIFDRTLCMLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLAKIFDSKQVEASTNRVVGTYGYMSPEYALDGYFSEKSDVFSFGVMVLEIISGKRNTGFYQSDQTPSLLGHAWKLWKEEKVLELMDQTLGETCNTNEFSRCVNVGLLCVQEDPSDRPTMAIAVLLLSSDAATMPVPKEPAFVVKRDLSRTASSSSKAEASWKNELLATIGEGR*	975

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0698	974	FunFam	Os08g0179000 protein	627	731	-	-
	Vvi12g0698	974	CDD	STKc_IRAK	662	920	-	-
	Vvi12g0698	974	Gene3D	-	23	150	IPR036426	-
	Vvi12g0698	974	Gene3D	Transferase(Phosphotransferase) domain 1	732	935	-	-
	Vvi12g0698	974	Pfam	D-mannose binding lectin	79	166	IPR001480	-
	Vvi12g0698	974	ProSiteProfiles	Bulb-type lectin domain profile.	27	149	IPR001480	-
	Vvi12g0698	974	SUPERFAMILY	Protein kinase-like (PK-like)	641	948	IPR011009	-
	Vvi12g0698	974	SMART	serkin_6	656	932	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g0698	974	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	117	953	-	-
	Vvi12g0698	974	ProSiteProfiles	Protein kinase domain profile.	656	942	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g0698	974	Pfam	Protein kinase domain	657	921	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g0698	974	SUPERFAMILY	alpha-D-mannose-specific plant lectins	78	208	IPR036426	-
	Vvi12g0698	974	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	732	935	-	-
	Vvi12g0698	974	Gene3D	Phosphorylase Kinase; domain 1	617	731	-	-
	Vvi12g0698	974	SMART	blect_4	34	152	IPR001480	-
	Vvi12g0698	974	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	777	789	IPR008271	GO:0004672\|GO:0006468
	Vvi12g0698	974	CDD	B_lectin	39	152	IPR001480	-
	Vvi12g0698	974	Pfam	S-locus glycoprotein domain	216	300	IPR000858	GO:0048544
	Vvi12g0698	974	ProSiteProfiles	EGF-like domain profile.	268	304	IPR000742	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0698	Vvi-Chr12	8023972	8027684	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0698	644	950	Receptor kinase-like Gene Family	AT4G11530	59.547	4.42e-127	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi12g0698		Pkinase	8.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0698	-		-	vvi:100247637	1983.76