Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0697 ATGCCAGATGCAATACTCAGCTTGTTATCCAACTTCAGCAAGACCGGTAAGCCAACCAGCTCTAGAAAATTCTACAATAGACCCCTTGAAATACTGTCCTCCAAGTATAAGAATACCAGTCGGTTGGTGATGAGCTCTTCAGGGGAAATACGGTACTATCTGAATCCGAATACATCATCTCCAGACTGGTGGGCACCGCAAGATCGATGCAGTGTGTCAAAAGCTTGTGGGAAATTCGGAAGTTGTAACACTAACAATGCTTTGATGTGCAAATGTTTACCTGGTTTCAAACCCGTCTCGCCGGATATTTGGAAAACTGGAGAGTTTTCAAGTGGGTGTACCAGAAAGTCTCCCATATGCGAGAAGAATTCCAGTGAAGACATGTTCCTGAGCTTTAAGATGATGAAAGTGAGAAAGCGAGACTCTGTGATTCCAGCAGATCCGAATGATAGTGACTATTGCAGAAAGGCTTGCCTTAAAAAATGCCAATGTCAAGCTTATGCTGAAACTTATATCAAACAAGGAAGAGATGTTCCTGATGCCCTAGAATGCTTGATTTGGACGGATGACCTTACTGGTCTTCAGGAGGAGTATGCCTCTGATGCCTACAACCTCTCCGTTCGTGTGGCTATTTCAGATATAAAACCAACAGTAAGGAATTGTGAAACTTGTGGCTCAAACATGATTCCTTATCCTCTAAGCACTGGATCAAAGTGTGGTGATTCAACGTACTTCAATTTTGAATGTAACAATACCACAGGCCAGGTTCAGTTCAAGGTACCTGGTGGTGCCTACCGAGTAACTAGCATTAACCCAGAGACATTAACATTTGTAATCCAACTGAAAGAGGCAGATTGCAGTTCACGAAGTCTGATTCCGCCACTAAACCCGCCTTTTCACTTGACTGATGTGTGCAAAGAGGTTGGAACTGACAATTTTGGCTCTGAGATGTCATTGAAAAATAGTATTGAAGTAGAGATCAGTTGGGATCCACCATTGGAGCCGGTGTGTACCTCATCAGCAGATTGCAAGGACTGGCCAAATTCAACCTGCGGAACGCGAGATGGAACGAGAAGTTCAGAGAACAGAGCAAATCAAGTGCTTCACTTATATGATAGTGAGAGTCGTGTGAAACACTTAATAGACTCAGAGCAATTCAAAGAAGAGGATAAGAAAGGCATTGATGTACCGTTTTTTGACTTAGAAGACATACTGGCTGCTACAGATAACTTTTTAGATGCAAATAAGCTTGGACAAGGAGGTTTTGGGCCAGTTTACAAGGGCAAGTTTCCAGAGGGACGAGAAATTGCGGTTAAGAGACTCTGCAACTCATATGCTGCTGCAATCTTTTTCTTCTTGTGTTCTATCCTGTGCTGCTCTGCTAGAGATACCATCACACCAAACAATTTGCTTTTTGATGATGGTAGAGGAACTCTTGTTTCAGCCAATCAAACTTTTGAATTGGGCTTCTTTATTCCCAAGGGAGGGTTCAACAATGGAAAATACATTGGCATATGGTACTACGGGTTGAAGGAGAGAACAGTTGTATGGGTAGCCAATAGAGACAACCCCCTTCCTGACGACAGTGTTGGAGCTCTTGTCATTGCAGATGACGGTAACCTCAAGCTAGTGAATGAAAGTGGAGCAGCTTACTGGTTTACTGATCTTGGAAGCTCGTCTTCTATGGGTAGGGTGGCCAAGGTCATGGATTCTGGGAACTTTGTTTTAAGCGACAACAGATCTGGGAAGATTCTTTGGGAGAGTTTCAAGAACCCAACTGATACTTTTCTTCCTGGGATGATTATGGAGGGAAACTTAACATTGACTTCATGGGTCAGCCCCGTTGACCCTGCACCTGGAAACTATACTTTCAAGAAAGATGATGATAAAGATCAGTATATCATATTTGAAGATTCAATTGTTAAATATTGGAGAAGTGAGGAATCAGAAGGAATGAGTTCTGCAGCAGCCGAGCTCTTATCCAATTTTAGCAAGACACAAAAACCAACTGGGTCTCAATTTGTCCGCAGTTCTTATACACGGTTGGTGATGAATTTCACCGGGGAAATAAGATATCTAGTTTGGGATAATTATACGGAGGAGTGGTCTGCATTCTGGTGGGCGCCGCAAGACCGATGCAGTGTGTTGAATGCTTGTGGGAATTTCGGTTCTTGCAATGTTAACAATGCATTTATGTGCAAATGTTTGCCTGGATTCGAGCCTAACTCGCTGGAGAGATGGACTAATGGAGATTTTTCAGGTGGGTGTTCTAAAAAGACAACCCTCTGTGGGGACACATTCTTGATCTTGAAGATGATTAAAGTAAGAAAGTATGACATTGAGTTTTTGGGTAAGGATGAAAGTGAATGCAGAAGAGAGTGCCTTAAGACCTGTCGCTGTCAAGCTTATGCTGGAGTTGGAAAGATACGAAGGGGCCGTGCTAGCACCCCTCCCAAGTGCTGGATTTGGTCTGAAGATCTCGGTAGTCTTCAGGAGTATAACACAGATGGCTATAATCTTTCTCTCCGTGTGGCCAAATCAGATATAGGTATCCTCTCTGCTTGCCCCCTTCTACTTCTGAATTTAATTGATTATGGTGGCAATCTTGCGGAGGCTCCAACACCTGCAAACCAGAAGTCATCATCATCATCCTCGGCTCTGGTAGTTGTGGTAGGCATAGTAACTGCTGTTGTAGTAGTTGCACTTCTATGCATCATTGGTTGTATTGCTTATTTTCGAAAAAGAACCATCTCCAAAGGGCAAGAAAACAGAACAAATCCAGGGCTTCACTTGTATCATAGCGAGAGCCGTGTGAAAGACTTAATAGACTCTGAGCAATTCAAAGAAGATGATAAGAAAGGCATTGACGTACCATTTTTCGACTTAGAAGACATACTGGCTGCTACAGATCACTTTTCAGATGCAAATAAGCTTGGACAGGGGGGCTTTGGGCCAGTTTACAAAGGAAAGTTTCCTGAAGGGCGAGAAATTGCAGTAAAGAGACTCTCAAGAGCTTCGGGACAAGGCTTACAGGAATTTAAGAACGAGGTTGTGTTAATTGCCAAACTTCAGCATCGAAATTTGGTTAGACTTTTGGGCTATTGTATTGAAGGAGATGAGAAGATTTTACTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTCATATTTGATCAAACTCTATGCCTGTTACTGAACTGGGAGAAGCGATTTGATATCATTTTGGGAATTGCTCGAGGGCTACTTTATCTTCACCAAGATTCAAGATTGAAGATTATCCATAGAGACTTGAAAACAAGCAACATTCTACTTGATGACGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAGGATTTTTGAGAGTAAGCAAGTAGAAGCAAGCACAAACAGAGTAGTTGGAACTTACGGGAAGAGGAACACCAGATCTTATCAGTCTGACCGGAATCTGAGCCTTCTAGCCCATGCATGGAAGCTGTGGAAGGAAGACAGGGTGTTGGAGTTGATGGACCAGACACTAAGTGAAACATGTAAAACAAATGAATTTCTGAGGTGCGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTTCCTAAACAACCAGCTTTTGTCGTAAGGAGAGACCTTTCCAGCTCAGCTTCTTCTTCAAGCAAACCAGAAGCATCCTTGAATAGTGAGTTCCTAGCCACCATAGAAGAAGGTCGATAG 3780 0.4307 MPDAILSLLSNFSKTGKPTSSRKFYNRPLEILSSKYKNTSRLVMSSSGEIRYYLNPNTSSPDWWAPQDRCSVSKACGKFGSCNTNNALMCKCLPGFKPVSPDIWKTGEFSSGCTRKSPICEKNSSEDMFLSFKMMKVRKRDSVIPADPNDSDYCRKACLKKCQCQAYAETYIKQGRDVPDALECLIWTDDLTGLQEEYASDAYNLSVRVAISDIKPTVRNCETCGSNMIPYPLSTGSKCGDSTYFNFECNNTTGQVQFKVPGGAYRVTSINPETLTFVIQLKEADCSSRSLIPPLNPPFHLTDVCKEVGTDNFGSEMSLKNSIEVEISWDPPLEPVCTSSADCKDWPNSTCGTRDGTRSSENRANQVLHLYDSESRVKHLIDSEQFKEEDKKGIDVPFFDLEDILAATDNFLDANKLGQGGFGPVYKGKFPEGREIAVKRLCNSYAAAIFFFLCSILCCSARDTITPNNLLFDDGRGTLVSANQTFELGFFIPKGGFNNGKYIGIWYYGLKERTVVWVANRDNPLPDDSVGALVIADDGNLKLVNESGAAYWFTDLGSSSSMGRVAKVMDSGNFVLSDNRSGKILWESFKNPTDTFLPGMIMEGNLTLTSWVSPVDPAPGNYTFKKDDDKDQYIIFEDSIVKYWRSEESEGMSSAAAELLSNFSKTQKPTGSQFVRSSYTRLVMNFTGEIRYLVWDNYTEEWSAFWWAPQDRCSVLNACGNFGSCNVNNAFMCKCLPGFEPNSLERWTNGDFSGGCSKKTTLCGDTFLILKMIKVRKYDIEFLGKDESECRRECLKTCRCQAYAGVGKIRRGRASTPPKCWIWSEDLGSLQEYNTDGYNLSLRVAKSDIGILSACPLLLLNLIDYGGNLAEAPTPANQKSSSSSSALVVVVGIVTAVVVVALLCIIGCIAYFRKRTISKGQENRTNPGLHLYHSESRVKDLIDSEQFKEDDKKGIDVPFFDLEDILAATDHFSDANKLGQGGFGPVYKGKFPEGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCIEGDEKILLYEYMPNKSLDSFIFDQTLCLLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFESKQVEASTNRVVGTYGKRNTRSYQSDRNLSLLAHAWKLWKEDRVLELMDQTLSETCKTNEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVPKQPAFVVRRDLSSSASSSSKPEASLNSEFLATIEEGR* 1260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0697 1259 SUPERFAMILY Protein kinase-like (PK-like) 396 448 IPR011009 -
Vvi12g0697 1259 MobiDBLite consensus disorder prediction 1232 1248 - -
Vvi12g0697 1259 SUPERFAMILY Protein kinase-like (PK-like) 957 1239 IPR011009 -
Vvi12g0697 1259 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 450 1200 - -
Vvi12g0697 1259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1093 1105 IPR008271 GO:0004672|GO:0006468
Vvi12g0697 1259 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 1048 1139 - -
Vvi12g0697 1259 FunFam Uncharacterized protein 372 462 - -
Vvi12g0697 1259 CDD B_lectin 468 592 IPR001480 -
Vvi12g0697 1259 ProSiteProfiles Bulb-type lectin domain profile. 462 589 IPR001480 -
Vvi12g0697 1259 ProSiteProfiles PAN/Apple domain profile. 763 845 IPR003609 -
Vvi12g0697 1259 Pfam PAN-like domain 764 828 IPR003609 -
Vvi12g0697 1259 Pfam PAN-like domain 120 192 IPR003609 -
Vvi12g0697 1259 ProSiteProfiles EGF-like domain profile. 709 745 IPR000742 -
Vvi12g0697 1259 SMART ntp_6 762 844 IPR003609 -
Vvi12g0697 1259 SMART ntp_6 124 209 IPR003609 -
Vvi12g0697 1259 Pfam D-mannose binding lectin 514 605 IPR001480 -
Vvi12g0697 1259 MobiDBLite consensus disorder prediction 1232 1259 - -
Vvi12g0697 1259 Gene3D Transferase(Phosphotransferase) domain 1 1048 1140 - -
Vvi12g0697 1259 ProSiteProfiles Protein kinase domain profile. 972 1259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0697 1259 SUPERFAMILY alpha-D-mannose-specific plant lectins 514 648 IPR036426 -
Vvi12g0697 1259 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 589 - -
Vvi12g0697 1259 SMART blect_4 468 592 IPR001480 -
Vvi12g0697 1259 CDD PAN_AP_plant 756 845 - -
Vvi12g0697 1259 SMART serkin_6 972 1212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0697 1259 Gene3D - 457 590 IPR036426 -
Vvi12g0697 1259 FunFam Uncharacterized protein 933 1032 - -
Vvi12g0697 1259 CDD PAN_AP_plant 120 210 - -
Vvi12g0697 1259 Pfam Protein kinase domain 973 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0697 1259 ProSiteProfiles PAN/Apple domain profile. 120 210 IPR003609 -
Vvi12g0697 1259 Gene3D Transferase(Phosphotransferase) domain 1 1141 1228 - -
Vvi12g0697 1259 Pfam S-locus glycoprotein domain 35 99 IPR000858 GO:0048544
Vvi12g0697 1259 Pfam S-locus glycoprotein domain 659 742 IPR000858 GO:0048544
Vvi12g0697 1259 Gene3D Phosphorylase Kinase; domain 1 372 450 - -
Vvi12g0697 1259 Gene3D Phosphorylase Kinase; domain 1 933 1047 - -
Vvi12g0697 1259 CDD EGF_CA 711 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0697 Vvi-Chr12 8001584 8007640 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0697 376 444 Receptor kinase-like Gene Family AT4G23230 46.377 8.65e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0697 Pkinase 2.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0697 - - vvi:100264794 1016.53