Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0695 ATGGCAACTGGGCAAGATCGAATGCTATGCGTGTTACTAAACTGGGAGAGTCGCTTCGACATCATTTTGGGAATTGCTCGAGGGCTAATTTATCTTCACCAAGATTCAAGGTTGAAGATCATTCACAGGGACTTGAAGACGAGCAACATTCTACTAGATGGGGATATGAATCCCAAAATTTCAGACTTCGGCTTGGCCAGGATCTTTGAGAGCAAGCAAACAGAGGCAAACACAAACATAGTAGTGGGCACTTAG 255 0.4431 MATGQDRMLCVLLNWESRFDIILGIARGLIYLHQDSRLKIIHRDLKTSNILLDGDMNPKISDFGLARIFESKQTEANTNIVVGT* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0695 84 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 84 - -
Vvi12g0695 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0695 84 Pfam Protein kinase domain 20 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0695 84 ProSitePatterns Serine/Threonine protein kinases active-site signature. 40 52 IPR008271 GO:0004672|GO:0006468
Vvi12g0695 84 FunFam Os07g0541700 protein 5 84 - -
Vvi12g0695 84 Gene3D Transferase(Phosphotransferase) domain 1 5 84 - -
Vvi12g0695 84 SUPERFAMILY Protein kinase-like (PK-like) 13 84 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0695 Vvi-Chr12 7979933 7980187 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0695 3 84 Receptor kinase-like Gene Family AT4G23280 67.073 1.10e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0695 Pkinase 2.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0695 - - vvi:100267196 157.147