LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0693	ATGCCATATGCAATACTCAGCTTGTTATCCAACTTCAGCAAGACCGGCAAGTCAACCAGCCCTGGAAAATTCTACAATAGAACCCTTGAAATAGTGTCCTCCAGGTATAAGAATACCAGTCGGTTGGTGATGAGTTCTTCAGGGGAAATCAGGTACTATCTGAATCCGAGTAGATCATCTCCAGACTGGTGGGCACCGCAAGATCGATGCAGTGTGCCAAAAGCTTGTGGGAAATTCGGTAGTTGTAACACTAACAATGCTTTGATGTGCAAATGTTTACCTGGGTTCAAACCCGCCTCGCCGGATATTTGGAAAACTGAAGAGTTTTCAAGTGGGTGTACCAGAAAGTCTCCCATATGCGAGAAGAGTTCCAGTGAAGACGTGTTCCTGAGCTTAAAGATGATGAAAGTGAGAAAGCCAGACCGTGTGATTATACCAGATACGAATGATAGTGATTATTGCAGAAAGGCTTGCCTTAAAGAATGCCGATGTCAAGCTTATGCTGAAACTTATATCAAACGACAAAGAGGTGTCACTGATGCCCTAGAATATTGCTTGATTTGGACGGATGACCTTACTGATCTTCAGGAGGAGTATGCCTCTGATGCCTACAACCTCTCCGTTCGTGTGGCCATTTCAGATATAACCCAGGTTCAGTTCAAGGTACCTGGTGGTCCCTACCGAGTAACTAGCATTAACCCAGAGACATTAACATTTGTAATCCAACTGAAAGAAGCGGATTGCAGTTCACGAAGTCTGATTCCGCCACTAAACCCGCCTTTTCACTTGACTGATGTGTGCAAAGAGGTTGGAACTGACAATTTTGGCTCTGAGATGTCATTGAAAAATAGTATTGAAGTAGAGATCAGTTGGGATCCACCATTGGAGCCGGTGTGTACCTCATCAGCAGATTGCAAGGACTGGCCAAATTCAACCTGCGGAACGCGAGATGGAACGAGAAGGTGCTTTTGCAATGAAAACTTCAAATGGAATAGCTCAAAGAACAGAGCAAATCAAGTGCTTCACTTATATGATAGTGAGAGTCATGTGAAACACTTAATAGACTCAGAGCAATTCAAAGAAGAGGATAAGAAAGGCATTGATGTACCGTTTTTCGACTTAGAAGACATACTGGCTGCTACAGATAACTTTTCAGATGCAAATAAGCTTGGACAAGGGGGTTTTGGTCCAGTTTACAAGGGCAAGTTTCCAGAGGGGCGAGAAATTGCGGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCCTACAGGAATTTAAGAATGAGGTTGTGTTAATTGCCAAACTTCAGCATCGGAATCTGGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTAAGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGTTGGGTTGTTGTGTGTGCAAGAAGACCCAAGTGACCGACCCACCATAGCAGTTGCAGTTGTAATGCTCAGTAGTGACATTGCAACAATGCCGGTTCCTAAACAACCGGCATTTGTCATAAAAAGAGACCTTTCTAGGACAGCTTCTTCTTCTAGCAAACCTGAAGCATCCTGGAACAGTGAAATCCTAGCTACCATAGAAGAAGAATCAACAGTAAGAAATTGTGAAACTTGTGGCACAAACTTGATCCCCTATCCACTAAGCACTGGACCAAACTGTGGTGATCCCATGTACTTCAGTTTCAGATGTGACAAGGCCACAGACCAAGTCTGGTTCGCCTTACCTAATGGCAGCTACCGAGTAACCAGCATCACTCCAGAGAGATCGAAGTTTCTCATCCAAGTGAATGATATTGATAACTGCGAAGCACGAAATTCACAAGACACGAAGATACTGCAGCTCAATCCACCTTTCAGGATAACTAGCTGGTGCAATGCTGACACAGGAAATTCTAGCTCCAGCATGCCTATGAAAGGTCAGTATGAAATTGAAATAAGTTGGGATCCACCACCAGAGCCGGTTTGTAACTCAGCAACAGACTGCAAGGACTGGCCAAATTCGAGTTGCAGAACGCAAAATAGAACGAGAAGGTGTTTTTGTAATCAAAACTTCAAATGGAACAGCTCCAGTTTAAATTGTACACAAGGGCGAGAAATTGCAGTAAAGAGACTCTCAAGAGCTTCGGGACAAGGCTTACAGGAATTTAAGAACGAGGTTGTGTTAATTGCCAAACTTCAGCATCGAAATTTGGTTAGACTTTTGGGCTATTGTATTGAAGGAGATGAGAAGATTTTACTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTCATATTTGATCAAACTCTATGCCTGTTACTGAACTGGGAGAAGCGATTTGATATCATTTTGGGAATTGCTCGAGGGCTACTTTATCTTCACCAAGATTCAAGATTGAAGATTATCCATAGAGACTTGAAAACAAGCAACATTCTACTTGATGACGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAGGATTTTTGAGAGTAAGCAAGTAGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAAAAGTCTGATGTCTTTAGCTTTGGTGTTGTGGTACTTGAGATCATCAGCGGGAAGAGGAACACCAGATCTTATCAGTCTGACCGGAATCTGAGCCTTCTAGCCCATGCATGGAAGCTGTGGAAGGAAGACAGGGTGTTGGAGTTGATGGACCAGACACTAAGTGAAACATGTAAAACAAATGAATTTCTGAGGTGCGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTTCCTAAACAACCAGCTTTTGTCGTAAGGAGAGACCTTTCCAGCTCAGCTTCTTCTTCAAGCAAACCAGAAGCATCCTTGAATAGTGAGTTCCTAGCCACCATAGAAGAAGGTCGATAG	3015	0.4345	MPYAILSLLSNFSKTGKSTSPGKFYNRTLEIVSSRYKNTSRLVMSSSGEIRYYLNPSRSSPDWWAPQDRCSVPKACGKFGSCNTNNALMCKCLPGFKPASPDIWKTEEFSSGCTRKSPICEKSSSEDVFLSLKMMKVRKPDRVIIPDTNDSDYCRKACLKECRCQAYAETYIKRQRGVTDALEYCLIWTDDLTDLQEEYASDAYNLSVRVAISDITQVQFKVPGGPYRVTSINPETLTFVIQLKEADCSSRSLIPPLNPPFHLTDVCKEVGTDNFGSEMSLKNSIEVEISWDPPLEPVCTSSADCKDWPNSTCGTRDGTRRCFCNENFKWNSSKNRANQVLHLYDSESHVKHLIDSEQFKEEDKKGIDVPFFDLEDILAATDNFSDANKLGQGGFGPVYKGKFPEGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLAWKLLKEDKVLELMDQTLSETCNTKEFLRCVNVGLLCVQEDPSDRPTIAVAVVMLSSDIATMPVPKQPAFVIKRDLSRTASSSSKPEASWNSEILATIEEESTVRNCETCGTNLIPYPLSTGPNCGDPMYFSFRCDKATDQVWFALPNGSYRVTSITPERSKFLIQVNDIDNCEARNSQDTKILQLNPPFRITSWCNADTGNSSSSMPMKGQYEIEISWDPPPEPVCNSATDCKDWPNSSCRTQNRTRRCFCNQNFKWNSSSLNCTQGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCIEGDEKILLYEYMPNKSLDSFIFDQTLCLLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFESKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVVVLEIISGKRNTRSYQSDRNLSLLAHAWKLWKEDRVLELMDQTLSETCKTNEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVPKQPAFVVRRDLSSSASSSSKPEASLNSEFLATIEEGR*	1005

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0693	1004	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	807	819	IPR008271	GO:0004672\|GO:0006468
	Vvi12g0693	1004	Pfam	S-locus glycoprotein domain	34	99	IPR000858	GO:0048544
	Vvi12g0693	1004	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	441	523	-	-
	Vvi12g0693	1004	ProSiteProfiles	Protein kinase domain profile.	685	972	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g0693	1004	Gene3D	Phosphorylase Kinase; domain 1	694	761	-	-
	Vvi12g0693	1004	CDD	STKc_IRAK	708	957	-	-
	Vvi12g0693	1004	CDD	PAN_AP_plant	120	211	-	-
	Vvi12g0693	1004	Gene3D	Transferase(Phosphotransferase) domain 1	762	965	-	-
	Vvi12g0693	1004	FunFam	Cysteine-rich receptor-like protein kinase 11	684	761	-	-
	Vvi12g0693	1004	SMART	serkin_6	689	957	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi12g0693	1004	SUPERFAMILY	Protein kinase-like (PK-like)	706	984	IPR011009	-
	Vvi12g0693	1004	Pfam	Protein tyrosine and serine/threonine kinase	706	952	IPR001245	GO:0004672\|GO:0006468
	Vvi12g0693	1004	Pfam	PAN-like domain	120	195	IPR003609	-
	Vvi12g0693	1004	SUPERFAMILY	Protein kinase-like (PK-like)	369	440	IPR011009	-
	Vvi12g0693	1004	MobiDBLite	consensus disorder prediction	980	1004	-	-
	Vvi12g0693	1004	FunFam	Uncharacterized protein	345	445	-	-
	Vvi12g0693	1004	ProSiteProfiles	PAN/Apple domain profile.	120	211	IPR003609	-
	Vvi12g0693	1004	Gene3D	Phosphorylase Kinase; domain 1	345	445	-	-
	Vvi12g0693	1004	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	762	965	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi12g0693	Vvi-Chr12	7919533	7931527	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0693	706	975	Receptor kinase-like Gene Family	AT4G23230	60.741	1.28e-112	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Vvi12g0693		PK_Tyr_Ser-Thr	1.3e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0693	-		-	vvi:100267087	575.474