Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0690 ATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAATGGGAAGAGGAACACTGGATTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTAAGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGCTGGGTTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTATCTTACTAA 345 0.4522 MSPEYALDGFFSEKSDVFSFGVMVLEIINGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLSETCNTKEFLRCVNAGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVSY* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0690 114 FunFam Uncharacterized protein 1 112 - -
Vvi12g0690 114 Pfam Protein tyrosine and serine/threonine kinase 1 98 IPR001245 GO:0004672|GO:0006468
Vvi12g0690 114 Gene3D Transferase(Phosphotransferase) domain 1 1 112 - -
Vvi12g0690 114 SUPERFAMILY Protein kinase-like (PK-like) 1 103 IPR011009 -
Vvi12g0690 114 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0690 Vvi-Chr12 7864685 7865124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0690 1 112 Receptor kinase-like Gene Family AT4G23140 52.679 1.85e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0690 PK_Tyr_Ser-Thr 1.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0690 - - vvi:104880909 228.794