Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0689 ATGTCGCATCTCGAGCTTCTGGAGTTGAACCAAACAGAATTCAAGTCACCAAGTTCTAACATATGCCCAATGCATATGCACTGTGGCTTCCAGGGCAAGTTTCTAGAGGGGCGAGAAATTGCGGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCTTACAGGAATTTAAGAATGAGGTTGTGTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGGCCAACAAAAGCTTAGATTCCTTCATATTTGTGGCTATGTCTCCGGAGTATGCATTGGATGGATATTTCTCAGAGAAGTCTGATGTCTTTTGCTTTGGTGTTATGGTACTTGAGATCATCAGTGGGAAGAGGAACACTGGATTTTATCAGTCTGACCGAACTCTGAGTCTTCTAGGTCATGCATGGAAGCTATGGAAAGAAGACAAGGTTTTGGAGTTGATGGACCAGACACTAAGTGAAACATGCAACACAAACGAATTTTCGAGGTGTGTAAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCCATTGCAGTTCTTCTGCTCAGCAGTGATGCTGCAACAGTGCCCGTTCCTAAAGAACCAGCTTTTGTTGTAAAGAGGAACCTTTCTAGTACAGCTTCTTCTTCTAGCAAGGCTGAAGCCTCCTGGAAGAATGAGCTTGTAGCCTCCATAGGAGAAGGGCGATAG 762 0.4409 MSHLELLELNQTEFKSPSSNICPMHMHCGFQGKFLEGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMANKSLDSFIFVAMSPEYALDGYFSEKSDVFCFGVMVLEIISGKRNTGFYQSDRTLSLLGHAWKLWKEDKVLELMDQTLSETCNTNEFSRCVNVGLLCVQEDPSDRPTMAIAVLLLSSDAATVPVPKEPAFVVKRNLSSTASSSSKAEASWKNELVASIGEGR* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0689 253 SUPERFAMILY Protein kinase-like (PK-like) 35 234 IPR011009 -
Vvi12g0689 253 FunFam Cysteine-rich receptor-like protein kinase 11 15 90 - -
Vvi12g0689 253 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 104 232 - -
Vvi12g0689 253 Gene3D Phosphorylase Kinase; domain 1 8 90 - -
Vvi12g0689 253 Pfam Protein tyrosine and serine/threonine kinase 104 200 IPR001245 GO:0004672|GO:0006468
Vvi12g0689 253 Pfam Protein tyrosine and serine/threonine kinase 37 100 IPR001245 GO:0004672|GO:0006468
Vvi12g0689 253 Gene3D Transferase(Phosphotransferase) domain 1 91 214 - -
Vvi12g0689 253 FunFam Uncharacterized protein 87 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0689 Vvi-Chr12 7862518 7863796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0689 104 249 Receptor kinase-like Gene Family AT4G23140 46.053 1.23e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0689 PK_Tyr_Ser-Thr 2.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0689 - - vvi:104880903 293.508