Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0688 ATGGTTCCTGTCTCTGCAACTCACATGCTATCTACCATCTTTTTCGTCTTGTGTTCTGTCCTGTATTGCTCTGCTAGAGATACCATCACACCGGAGGACTGGCTTAGTAATGATGGAGAAACTGTTGTTTCTGCAGGCAAAACTTTTGAACTTGGCTTCTTTAATCCAGGTGGAAGCTCCAAGATTGGAAGATTCGTGGGCATATGGTATTACAGGTCGAAACCACAAAGAGTTGTATGGGTGGCCAACCGAAAGAACCCCCTTCCCCTTTCTGACACCCCCTCTGGAGTTTTTGCCATTAAAGAAGATGGTCAGCTCAAGGTATTGGATGCAAATGGGACAGTTCACTGGCATTCTGATATTGAAACATCTTTATCTACAGGGAGGGTGGTGAAGCTCATGGACTCTGGGAACCTTGTTTTGAGCTACAACAGATCGGGGAAGATTCTTTGGGAGAGCTTCCATAATCCTACAGATACTTTTCTTCCGGGGATGAAGATGGATGAAACCTTAACATTGACTTCATGGCTGAGTTCTGTTGACCCGGCACCTGGAAACTATACTTTCAAGATAGATCAAGACAATAAGGATCATTATAACATATGGGAAAGTTCAATTGTCCCATATTGGAGCAGTGAGGACTCGAAAGGAACGCCTGATGAAATTCCAGATGCAATACTCAGCTTGTTATCCAACCTCAGCAAGAATGGTAAGCCAACCAGCTATATAAAATTCTTCAATGGAACCCTTGAAATACTGTCCCGCAGGTATAAGAATACCACGCGGTTGGTGATGAATTCTTCAGGGGAAATCCAGTACTATCTGAATCCGAATACATCATCTCCAGACTGGTGGGCACCTCGAGATCGATGCAGTGTGTCAAAAGCTTGTGGGAAATTCGGTAGTTGTAACACTAAAAATCCTTTGATGTGCAAATGTTTACCTGGGTTCAAACCCGCCTCGCCGGATAAGTGGAAAACTGAAGACTTTTCAAGTGGGTGTACCAGAAAGTCTCCCATATGCGAGGAGAATTCTAGTAAAGACATGTTCCTGAGCTTAAAGATGATGAAAGTGAGAAAGCCAGACTCTCAGATTGACGCAGATCCAAATGATAGTGATCCTTGCAGAAAGGCTTGCCTTGAAAAATGCCAATGTCAAGCTTATGCTGAAACTTATATCAAACAAGAAAGAGGTGATACTGATGCCCTAAAATGCTTGATTTGGACGGAAGACCTTACTGATCTTCAGGAGGAGTATGCCTTTGATGCCCACAACCTCTCCGTTCGTGTGGCCATTTCAGATATAAAACCAACAGTAAGGAATTGTGAAACTTGTGGTTCAAGCATGATTCCTTATCCTCTAAGCACTGGATCAAAGTGTGGTGATCCCATGTACTTCAATTTTGAGTGTAACAGTACCACAGGCCAGGTTCAGTTCAAGGTACCTGGTGGTGCCTACCGAGTAACTAGCATTAACCCAGAGACATTAAGATTTGTAATCCAACTGAAAGAAGCAGATTGCAGTTCTCGAAGTTTAATTCCGCCACTAGACCCACCTTTTCGCATAACTGATGCGTGCAAAGAGGTTGGAACTGACCATTTTGGCTCTGAGATGTCATTGAAAAATAGTATTGAAGTAGAGATCAGTTGGGATCCACCATCGGAGCCGGCGTGTACCTCATCAGCAGATTGCAAAGACTGGCCAAATTCAATCTGCGGAACGCGAGATGGAATGAGTAGGTGCTTTTGCAATGAAAACTTCAAATGGAATAGCTCAAGTTTAAATTGTACACAAGGTGTCAAACCTGCTGATCAGAAGTCATCGTGGTCATCTCCAGTGGTTGTGGTAGGCATAACAATTGCTGTTGTTCTAGTTGCGGTTTTAGGCATCATTGGTTATATTGCTTATTTGCGCAAAAGAACCATCACCAAAAGGAAAGAGAACAGAGCAAATCAAGTGCTTCACTTATATGATAGTGAGAGTCGTGTGAAACACTCAATAGACTCGGAGCAATTCAAAGAAGAGGATAAGAAAGGCATTGATGTACCGTTTTTCGACTTAGAAGACATACTGGCTGCTACAAATAACTTTTCAGATGCAAATAAGCTTGGACAAGGGGGTTTTGGGCCAGTTTACAAGGGCAAGTTTCCAGAGGGGCAAGAAATTGCAGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCCTACAGGAATTTAAGAATGAGGTTGTTTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGGCCAACAAAAGCTTAGATTCCTTCATATTTGATCGAACCCTATGCATGTTACTGAACTGGGAGAAGCGGTTTGACATCATTATGGGAATTGCTAGAGGGCTGCTGTATCTTCACCAAGATTCAAGATTGAAGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTTGATGATGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCGAGGATTTTTGACAGTAAGCAAGTAGAGGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAGTGGGAAGAGGAACACTGGCTTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTATGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACATTGCAACAATGCCGGTTCCTAAACAACCGGCTTTTGTCCTAAAAAGAGACCTTTCTAGGACAGCTTCTTCTTCTAGCAAACCTGAAGTATCCTGGAACAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 3048 0.4288 MVPVSATHMLSTIFFVLCSVLYCSARDTITPEDWLSNDGETVVSAGKTFELGFFNPGGSSKIGRFVGIWYYRSKPQRVVWVANRKNPLPLSDTPSGVFAIKEDGQLKVLDANGTVHWHSDIETSLSTGRVVKLMDSGNLVLSYNRSGKILWESFHNPTDTFLPGMKMDETLTLTSWLSSVDPAPGNYTFKIDQDNKDHYNIWESSIVPYWSSEDSKGTPDEIPDAILSLLSNLSKNGKPTSYIKFFNGTLEILSRRYKNTTRLVMNSSGEIQYYLNPNTSSPDWWAPRDRCSVSKACGKFGSCNTKNPLMCKCLPGFKPASPDKWKTEDFSSGCTRKSPICEENSSKDMFLSLKMMKVRKPDSQIDADPNDSDPCRKACLEKCQCQAYAETYIKQERGDTDALKCLIWTEDLTDLQEEYAFDAHNLSVRVAISDIKPTVRNCETCGSSMIPYPLSTGSKCGDPMYFNFECNSTTGQVQFKVPGGAYRVTSINPETLRFVIQLKEADCSSRSLIPPLDPPFRITDACKEVGTDHFGSEMSLKNSIEVEISWDPPSEPACTSSADCKDWPNSICGTRDGMSRCFCNENFKWNSSSLNCTQGVKPADQKSSWSSPVVVVGITIAVVLVAVLGIIGYIAYLRKRTITKRKENRANQVLHLYDSESRVKHSIDSEQFKEEDKKGIDVPFFDLEDILAATNNFSDANKLGQGGFGPVYKGKFPEGQEIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMANKSLDSFIFDRTLCMLLNWEKRFDIIMGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFDSKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVMVLEIISGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLCETCNTKEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDIATMPVPKQPAFVLKRDLSRTASSSSKPEVSWNSEILATIEEGR* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0688 1015 ProSiteProfiles Bulb-type lectin domain profile. 26 154 IPR001480 -
Vvi12g0688 1015 Pfam Protein tyrosine and serine/threonine kinase 701 963 IPR001245 GO:0004672|GO:0006468
Vvi12g0688 1015 SUPERFAMILY Protein kinase-like (PK-like) 682 998 IPR011009 -
Vvi12g0688 1015 ProSiteProfiles Protein kinase domain profile. 697 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0688 1015 CDD PAN_AP_plant 341 431 - -
Vvi12g0688 1015 FunFam Uncharacterized protein 866 977 - -
Vvi12g0688 1015 Gene3D Transferase(Phosphotransferase) domain 1 773 976 - -
Vvi12g0688 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vvi12g0688 1015 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 179 IPR036426 -
Vvi12g0688 1015 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 773 864 - -
Vvi12g0688 1015 SMART blect_4 33 157 IPR001480 -
Vvi12g0688 1015 CDD B_lectin 35 157 IPR001480 -
Vvi12g0688 1015 Pfam PAN-like domain 341 415 IPR003609 -
Vvi12g0688 1015 CDD STKc_IRAK 703 968 - -
Vvi12g0688 1015 FunFam Receptor-like serine/threonine-protein kinase SD1-8 21 154 - -
Vvi12g0688 1015 Gene3D - 21 155 IPR036426 -
Vvi12g0688 1015 Pfam S-locus glycoprotein domain 254 320 IPR000858 GO:0048544
Vvi12g0688 1015 Gene3D Phosphorylase Kinase; domain 1 657 772 - -
Vvi12g0688 1015 SMART serkin_6 697 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0688 1015 ProSiteProfiles PAN/Apple domain profile. 341 431 IPR003609 -
Vvi12g0688 1015 FunFam Uncharacterized protein 658 757 - -
Vvi12g0688 1015 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 126 994 - -
Vvi12g0688 1015 Pfam D-mannose binding lectin 78 169 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0688 Vvi-Chr12 7856363 7860518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0688 602 983 Receptor kinase-like Gene Family AT4G23230 51.832 9.03e-129 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0688 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0688 - - vvi:100267151 2048.48