Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0687 ATGGAACCTATCCACCTTGCCTACACTGCAAAAAGACAAATCACCCACAAAGGAAGTGTTGGTGGAGGCCTGATGTCAAGTGCAAGAAATATGGTTAGATTGGACACATGGAGTGGATTTGCAAGTCACGACAACATGAAGAGGCAAAAACTTATGTTGATACCTCGCGCTCCTGGTGTTCCACAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAATGGGAAGAGGAACACTGGATTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTAAGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGCTGGGTTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACATTCCCAGGCAAGTTTCTAGAGGGGCGAGAAATTGCGGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCTTACAGGAATTTAAGAATGAGGTTGTGTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGTGGCTATGTCTCCGGAGTATGCATTGGATGGATATTTCTCAGAGAAGTCTGATGTCTTTTGCTTTGGTGTTATGGTACTTGAGATCATCAGTGGGAAGAGGAACACTGGATTTTATCAGTCTGACCGAACTCTGAGTCTTCTAGGTCATGTCCGATCCCTCTGTTACTACCACAAACCCAAAAAAAAATTCATAATTTTAGCTTTACTACCTATATCACATCGCGAGCTTCTGGAGTCGAACCAAATAGAATTCAAGTCACCAAGTTCTAACATATGCCCAATGCATATGCACTGTGGCTTCCAGGGCAAGTTTCCAGAGGGGCAAGAAATTGCAGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCCTACAGGAATTTAAGAATGAGGTTGTTTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGCCCAACAAAAGCTTAGATTCCTTCATATTTGATCGAACCCTATGCATGTTACTGAACTGGGAGAAGCGGTTTGACATCATTATGGGAATTGCTAGAGGGCTGCTGTATCTTCACCAAGATTCAAGATTGAAGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTTGATGATGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCGAGGATTTTTGACAGTAAGCAAGTAGAGGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAGTGGGAAGAGGAACACTGGCTTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTATGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACATTGCAACAATGCCGGTTCCTAAACAACCGGCTTTTGTCCTAAAAAGAGACCTTTCTAGGACAGCTTCTTCTTCTAGCAAACCTGAAGCATCCTGGAACAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 1842 0.4338 MEPIHLAYTAKRQITHKGSVGGGLMSSARNMVRLDTWSGFASHDNMKRQKLMLIPRAPGVPQKSDVFSFGVMVLEIINGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLSETCNTKEFLRCVNAGLLCVQEDPSDRPTMAVAVVMLSSDTATFPGKFLEGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEVAMSPEYALDGYFSEKSDVFCFGVMVLEIISGKRNTGFYQSDRTLSLLGHVRSLCYYHKPKKKFIILALLPISHRELLESNQIEFKSPSSNICPMHMHCGFQGKFPEGQEIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMPNKSLDSFIFDRTLCMLLNWEKRFDIIMGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFDSKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVMVLEIISGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLCETCNTKEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDIATMPVPKQPAFVLKRDLSRTASSSSKPEASWNSEILATIEEGR* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0687 613 FunFam Cysteine-rich receptor-like protein kinase 11 295 370 - -
Vvi12g0687 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vvi12g0687 613 CDD STKc_IRAK 312 566 - -
Vvi12g0687 613 ProSiteProfiles Protein kinase domain profile. 251 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0687 613 SUPERFAMILY Protein kinase-like (PK-like) 164 260 IPR011009 -
Vvi12g0687 613 SUPERFAMILY Protein kinase-like (PK-like) 60 150 IPR011009 -
Vvi12g0687 613 Gene3D Phosphorylase Kinase; domain 1 155 211 - -
Vvi12g0687 613 Gene3D Phosphorylase Kinase; domain 1 297 370 - -
Vvi12g0687 613 Pfam Protein tyrosine and serine/threonine kinase 316 561 IPR001245 GO:0004672|GO:0006468
Vvi12g0687 613 Gene3D Transferase(Phosphotransferase) domain 1 212 275 - -
Vvi12g0687 613 SUPERFAMILY Protein kinase-like (PK-like) 315 596 IPR011009 -
Vvi12g0687 613 SMART serkin_6 310 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0687 613 Gene3D Transferase(Phosphotransferase) domain 1 371 574 - -
Vvi12g0687 613 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 161 209 - -
Vvi12g0687 613 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 371 462 - -
Vvi12g0687 613 FunFam - 212 275 - -
Vvi12g0687 613 Gene3D Transferase(Phosphotransferase) domain 1 46 154 - -
Vvi12g0687 613 FunFam Uncharacterized protein 464 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0687 Vvi-Chr12 7824297 7846188 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0687 310 584 Receptor kinase-like Gene Family AT4G23230 58.545 2.79e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0687 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0687 - - vvi:104880907 600.512