Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0686 ATGATTAAAGTAAGAAAGTATGACATTGAGTTTTCGGGTAAGGATGAAAGTGAATGCCGAAGAGAGTGCCTTAAGACCTGTCGCTGTCAAGCTTATGCTGGAGTTGGAACGATACGAAGGGGCCGTGCTAGCACCCCTCCCAAGTGCTGGATTTGGTCTGAAGATCTCGGTAGTCTTCAGGAGTATAACACAGATGGCTATAATCTTTCTCTCCGTGTCGCCAAATCAGATATAGAATCAACAGTAAGAAATTGTGAAACTTGTGGCACAAACTTGATCCCCTATCCACTAAGCACTGGACCAAACTGTGGTGATCCCATGTACTTCAGTTTCAGATGTGACAAGGCCACAGACCAAGTCTGGTTCGCCTTACCTAATGGCAGCTACCGAGTAACCAGCATCACTCCAGAGAGATCGAAGTTTCTCATCCAAGTGAATGATATTGATAACTGCGAAGCACGAAATTCACAAGACACGAAGATACTGCAGCTCAATCCACCTTTCAGGATAGCTAGCTGGTGCAATGCTGACACAGGAAATTCTAGCTCCAGCATGCCTATGAAAGGTCAGTATGAAATTGAAATAAGTTGGGATCCACCACCAGAGCCGGTTTGTAACTCAGCAACAGACTGCAAGGACTGGCCAAATTCGAGTTGCAGAACGCAAAATAGAACGAGAAGGTGTTTTTGTAATCAAAACTTCAAATGGAACAGCTCCAGTTTAAATTGTACACAAGATGGTGGCAATCTTGCGGAGGCTCCAACACCTGCAAACCAGAAGTCATCATCATCATCCTCTGCTCTGGTGGTTGTGGTAGGCATAGTAACTGCTGTTGTAGTAGTTGCACTTCTATGCATCATTGGTTGTATTGCTTATTTTCGAAAAAGAACCATCTCCAAAGGGCAAGAAAACAGAACAAATCCAGGGCTTCACTTGTATCATAGCGAGAGCCGTGTGAAAGACTTAATAGACTCTGAGCAATTCAAAGAAGATGATAAGAAAGGCATTGACATACCATTTTTCGACTTAGAAGACATACTGGCTGCTACAGATCACTTTTCAGATGCAAATAAGCTTGGACAGGGGGGCTTTGGGCCAGTTTACAAAGAATTTAAGAACGAGGTTGTGTTAATTGCCAAACTTCAGCATCGAAATTTGGTTAGACTTTTGGGCTATTGTATTGAAGGAGATGAGAAGATTTTACTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTCATATTTGATCAAACTCTATGCCTGTTACTGAACTGGGAGAAGCGATTTGATATCATTTTGGGAATTGCTCGAGGGCTACTTTATCTTCACCAAGATTCAAGATTGAAGATTATCCATAGAGACTTGAAAACAAGCAACATTCTACTTGATGACGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAGGATTTTTGAGAGTAAGCAAGTAGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAAAAGTCTGATGTCTTTAGCTTTGGTGTTGTGGTACTTGAGATCATCAGTGGGAAGAGGAACACCAGATCTTATCAGTCTGACCTGAATCTGAGCCTTCTAGCCCATGCATGGAAGCTGTGGAAGGAAGACAGGGTGTTGGAGTTGATGGACCAGACACTAAGTCAAACATGCAACACAAATGAATTTCTGAGGTGCGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTTCCTAAACAACCAGCTTTTGTCGTAAGGAGAGACCTTTCCAGCTCAGCTTCGTCTTCAAGCAAACCAGAAGCATCCTTGAATAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 1947 0.4319 MIKVRKYDIEFSGKDESECRRECLKTCRCQAYAGVGTIRRGRASTPPKCWIWSEDLGSLQEYNTDGYNLSLRVAKSDIESTVRNCETCGTNLIPYPLSTGPNCGDPMYFSFRCDKATDQVWFALPNGSYRVTSITPERSKFLIQVNDIDNCEARNSQDTKILQLNPPFRIASWCNADTGNSSSSMPMKGQYEIEISWDPPPEPVCNSATDCKDWPNSSCRTQNRTRRCFCNQNFKWNSSSLNCTQDGGNLAEAPTPANQKSSSSSSALVVVVGIVTAVVVVALLCIIGCIAYFRKRTISKGQENRTNPGLHLYHSESRVKDLIDSEQFKEDDKKGIDIPFFDLEDILAATDHFSDANKLGQGGFGPVYKEFKNEVVLIAKLQHRNLVRLLGYCIEGDEKILLYEYMPNKSLDSFIFDQTLCLLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFESKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVVVLEIISGKRNTRSYQSDLNLSLLAHAWKLWKEDRVLELMDQTLSQTCNTNEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVPKQPAFVVRRDLSSSASSSSKPEASLNSEILATIEEGR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0686 648 CDD STKc_IRAK 359 601 - -
Vvi12g0686 648 Pfam Protein tyrosine and serine/threonine kinase 369 596 IPR001245 GO:0004672|GO:0006468
Vvi12g0686 648 SUPERFAMILY Protein kinase-like (PK-like) 337 628 IPR011009 -
Vvi12g0686 648 SMART serkin_6 353 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0686 648 Gene3D Transferase(Phosphotransferase) domain 1 407 609 - -
Vvi12g0686 648 Pfam PAN-like domain 13 57 IPR003609 -
Vvi12g0686 648 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 627 - -
Vvi12g0686 648 Gene3D Phosphorylase Kinase; domain 1 370 406 - -
Vvi12g0686 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Vvi12g0686 648 Gene3D Phosphorylase Kinase; domain 1 314 369 - -
Vvi12g0686 648 CDD PAN_AP_plant 1 74 - -
Vvi12g0686 648 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 406 609 - -
Vvi12g0686 648 ProSiteProfiles Protein kinase domain profile. 292 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0686 Vvi-Chr12 7815641 7818336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0686 269 619 Receptor kinase-like Gene Family AT4G23230 50.000 1.09e-117 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0686 PK_Tyr_Ser-Thr 4.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0686 - - vvi:100256737 1264.98