Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0685 ATGGTTGTTGATAGAAAACATTGGGGATTAATTCAGCAGCAGCCTCTACCACAGCTCCAAGTGAAGAAGGGAAGTCTTAACTACCTAATGGTAATCAATAGAAGAAGAATTGCAATTACATGGTCAACAACAATTCACATGGTATCTACCATCTTCATCTTGTACCCAATATTGTTGTGTTGTTATCAAACATGTGCAGCAAGAGATACCATAAGGCAGAATGATCCGATCAGTGATGGTGATGGAGAAACTCTCTTGTCTGCTGGTAAGACATTTGAATTGGGGTTCTTCACCCCTAATGGGAGCTCTAGTCACCAAAGATATGTTGGTATATGGTATTACAGGTTGGAGCCGAAAACCGTTGTGTGGGTAGCCAATAGAAACGACCCACTGCCTGATTCCACTGGAGTTTTGTCCATTCAAGATGGTAACCTCGTGTTGAATTCGAATGGAAGAGGGAGACCTTTCTGGTCAACCCCTCTCCAGAAATCGTCATCTACAGAAAAGGTAGCGCAGCTCATAGATTCCGGGAACCTGGTTCTGAAGAATGATCAGCTGCAAACAAGTCTGTGGCAAAGCTTTGGAAACGCAACTGATACTTTTCTTCCAGGTATGAAGATGGATGGCAACTTGGTGTTGACTTCATGGAAAAGCAGCAGTGACCCGGGTTCGGGGAACTTCACTTTCAGGAAAGATCAAGTAGCACAGAACCTGTACATCATCCAGAATGGGCCTAATACATACTGGAAGAGTGGGATATCAGATGATTTCATTACATCCGGTTGGGACCATAAGATGTATTCTGAATTATCCAAAATGTTATCAAATTCCAGCATTAATAGTAGCCAACCAACAACCTCTTTTTATTATAGGAGGTTGGTGATGAAATTTTCCGGCCAGATAGAGTATCTACAGTTCCGTAATCAGACGGGCTCTTGGTATTCGCTTTTGAAGGAACCAAAAAACAGTTGCGATGGGAATAATCCCTGTGGGAGTTTTGCCAGCTGCAGTACTAGAAATAGGATTTTGTGCAGGTGTTTGCCAGGATTCCAACCAAATTTTCCAGCAAAGTGGAATGGTGGAGATTTTTCGGGGGGCTGTAGAAGAATTTCACCCCTGTGCAGCAAGAATGACACTTTTTTGAGGCTAGAGATGATGAGAGTGAAAAAATCAGACACACAGTTCAACACTACAAATGAAAAAGAATGCGAAAATTACTGCAACAGAGACTGTAACAACTGCCAGGCTTATGCCTATGTTGAAGCCGAGACTCGTGCAGACACTGCCATCTGTATGATTTGGGAGGAAAATCTTAATGACATTCAGGAGGCGTATTTGGATGGCGGCCATGATCTCTATGTGCGTGTGGCAGTTTCTGATATAGAACCGATGGGAAGAAATTGTAAGATTTGTGGAACTAATATTATCCCATATCCGCTAAGCACCGGAACTGACTGCGGTGATCCCAAGTACTTGAGTTTCTACTGTGAAAACTCCACAGGCCAAGTTATTTTTATGAGACCGAATAACACATATTACCAAGTCACTAGCATCAGGCCAGAAGCAAAAGAATTTTCCATTCAACTTGGTGAAGATAATTGTATAGCAAGTAGCGATGCCATGAAGAAACTTCTGGAGTTCAACCAGGACTCACCATTTTTGGTGAAAAGTGGGTGCACGGCAGAGAAGAGTACTTCTAGTTTGTATCCATTTTCTGATGCTGAATGGTTACGCGAAATACAGATTGAGTGGAGACCTCCATTGGAACCAATCTGTAATTCTACTGAAGACTGCAAGTACTGGGCTCATTCAAATTGCAATACAACAGGAGATGGACAGAAAAGGTGTCATTGCAAAATAAACTATCAGTGGGATCCCACAAATGTCAGTTGCTTTCCAGTAGAACACAGGGGAAGTATTCAAGGAAATCCAGTGCTTCATCTGTATCACAGTGAGAGACGCGTCAAAGACTTGATTGGCTGGGGCCAGTTCACAGAAGATGACAGGGAAGGCATAGATGTACCATTTTTTGATCTGGGAAGTATACTAGCTGCTACAAATAATTTGTCAGATGCAAATAAGCTAGGGCAAGGAGGTTTTGGCCCAGTATACAAGGGGAGCTTTCCAGGAGGACAAGACATTGCTGTGAAGAGGCTCTCAAGTGTTTCAGGACAAGGACTAGAAGAGTTCAAGAATGAGGTTGTGCTGATTGCCAAACTTCAGCATCGAAATCTTGTCAGACTTTTGGGCTATTGTGTTGAAGAAGATGAAAAGATATTACTCTACGAGTATATGCCAAATAAAAGCTTAGACTCCTTCATATTTGACCGAACGCTTCGCTTCTTATTGAACTGGGAGAAACGCTTCGACATCATTTTGGGGATAGCTCGTGGGCTTCTTTATCTTCACCAAGATTCTAGGCTGAGGATCATTCACAGAGACCTGAAAACAAGCAACATTCTGCTGGATGAGGAGATGAATCCCAAAATTTCGGACTTTGGCTTGGCAAGGATTTTTGGGGGCAAACAAACTGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCACTAGATGGCTTCTTTTCCATTAAATCCGATGTTTTCAGCTTCGGTGTTGTTGTACTCGAGATCATCAGCGGGAAAAGGAACACTGGATTTTATCAGTCTCAACAAGCTTTAAGCCTTCTGGGTTATGCATGGAGATTGTGGCAAGAGAACAAGGCATTGGACTTGATGGATCAGTCACTGCATGAAACATGTGATGTCGCTGAATTTTTGAGATGTGTAAATGTTGGGCTCCTCTGTGTTCAAGAAGACCCGAGCGATCGTCCTGTCATGTCGAATGTAGTTTTCTTGCTTGGCAGTGAAACTGCAACTCTTCCAACTCCTAAACAACCAGCTTTTACTGTGAGAAGAGGGGTTTTCAGCACAGCTTCTTCATCTAGTAAACCAGAGACATGTACCAATGAGTTAACAGTCAGTGTAGACGGCAGATAA 3018 0.4271 MVVDRKHWGLIQQQPLPQLQVKKGSLNYLMVINRRRIAITWSTTIHMVSTIFILYPILLCCYQTCAARDTIRQNDPISDGDGETLLSAGKTFELGFFTPNGSSSHQRYVGIWYYRLEPKTVVWVANRNDPLPDSTGVLSIQDGNLVLNSNGRGRPFWSTPLQKSSSTEKVAQLIDSGNLVLKNDQLQTSLWQSFGNATDTFLPGMKMDGNLVLTSWKSSSDPGSGNFTFRKDQVAQNLYIIQNGPNTYWKSGISDDFITSGWDHKMYSELSKMLSNSSINSSQPTTSFYYRRLVMKFSGQIEYLQFRNQTGSWYSLLKEPKNSCDGNNPCGSFASCSTRNRILCRCLPGFQPNFPAKWNGGDFSGGCRRISPLCSKNDTFLRLEMMRVKKSDTQFNTTNEKECENYCNRDCNNCQAYAYVEAETRADTAICMIWEENLNDIQEAYLDGGHDLYVRVAVSDIEPMGRNCKICGTNIIPYPLSTGTDCGDPKYLSFYCENSTGQVIFMRPNNTYYQVTSIRPEAKEFSIQLGEDNCIASSDAMKKLLEFNQDSPFLVKSGCTAEKSTSSLYPFSDAEWLREIQIEWRPPLEPICNSTEDCKYWAHSNCNTTGDGQKRCHCKINYQWDPTNVSCFPVEHRGSIQGNPVLHLYHSERRVKDLIGWGQFTEDDREGIDVPFFDLGSILAATNNLSDANKLGQGGFGPVYKGSFPGGQDIAVKRLSSVSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEEDEKILLYEYMPNKSLDSFIFDRTLRFLLNWEKRFDIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKQTEASTNRVVGTYGYMSPEYALDGFFSIKSDVFSFGVVVLEIISGKRNTGFYQSQQALSLLGYAWRLWQENKALDLMDQSLHETCDVAEFLRCVNVGLLCVQEDPSDRPVMSNVVFLLGSETATLPTPKQPAFTVRRGVFSTASSSSKPETCTNELTVSVDGR* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0685 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Vvi12g0685 1005 ProSiteProfiles Bulb-type lectin domain profile. 68 194 IPR001480 -
Vvi12g0685 1005 Gene3D Transferase(Phosphotransferase) domain 1 765 967 - -
Vvi12g0685 1005 ProSiteProfiles PAN/Apple domain profile. 374 457 IPR003609 -
Vvi12g0685 1005 Pfam S-locus glycoprotein domain 270 353 IPR000858 GO:0048544
Vvi12g0685 1005 Pfam PAN-like domain 374 441 IPR003609 -
Vvi12g0685 1005 Pfam Protein tyrosine and serine/threonine kinase 692 957 IPR001245 GO:0004672|GO:0006468
Vvi12g0685 1005 CDD STKc_IRAK 695 957 - -
Vvi12g0685 1005 ProSiteProfiles EGF-like domain profile. 320 356 IPR000742 -
Vvi12g0685 1005 Pfam Domain of unknown function (DUF3403) 962 1002 IPR021820 GO:0004674
Vvi12g0685 1005 SMART serkin_6 689 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0685 1005 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 63 194 - -
Vvi12g0685 1005 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 55 948 - -
Vvi12g0685 1005 ProSiteProfiles Protein kinase domain profile. 689 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0685 1005 Gene3D Phosphorylase Kinase; domain 1 664 764 - -
Vvi12g0685 1005 Pfam D-mannose binding lectin 120 211 IPR001480 -
Vvi12g0685 1005 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 655 764 - -
Vvi12g0685 1005 Gene3D - 63 195 IPR036426 -
Vvi12g0685 1005 SUPERFAMILY alpha-D-mannose-specific plant lectins 121 222 IPR036426 -
Vvi12g0685 1005 CDD PAN_AP_plant 374 457 - -
Vvi12g0685 1005 CDD B_lectin 80 196 IPR001480 -
Vvi12g0685 1005 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 765 968 - -
Vvi12g0685 1005 SMART blect_4 74 197 IPR001480 -
Vvi12g0685 1005 SUPERFAMILY Protein kinase-like (PK-like) 674 959 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0685 Vvi-Chr12 7808538 7812841 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0685 666 1005 Receptor kinase-like Gene Family AT4G23150 56.471 3.60e-128 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0685 PK_Tyr_Ser-Thr 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0685 - - vvi:100267196 2034.61