Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0684 ATGGATCTTCCGCTATTTTCTTTTCAAATTGTACCCGGCAGAATTGAGAAAATTGCAGAGCAATTCAAAGATGAGGATAAGGAAGGCATTGATGTACCATTTTTCGACTTAAAAGACATCCTGGCTGCTACGGATAACTTTTCAGATTCGCATAAGCTTGGACAAGGGGGCTTTGGGCCGGTTTACAAGGGCAAATTTCCAGATGGGAAGGAAGTAGTTGTGAAGAGACTCTCAAGTGCTTCAAGGCAAGGCCTAGTGGAATTTAAGAATGAGGTTGTGTTGATTGCCAAACTTCAGCATCGAAATCTGGTTAGACTTCTGGGCTATTGTATTGAAGGAGAAGAGAAAATTTTACTTTATGAATATATGCCCAACAAAAGCTTAGACTCCTTCATATTTGGTTTGCCTCTAAACCTACGTCAAGTCCCTACTTTTGTTGTATCATTGCATACGTGCTATGAACTGATAGACAGAATCTAA 480 0.4 MDLPLFSFQIVPGRIEKIAEQFKDEDKEGIDVPFFDLKDILAATDNFSDSHKLGQGGFGPVYKGKFPDGKEVVVKRLSSASRQGLVEFKNEVVLIAKLQHRNLVRLLGYCIEGEEKILLYEYMPNKSLDSFIFGLPLNLRQVPTFVVSLHTCYELIDRI* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0684 159 Gene3D Phosphorylase Kinase; domain 1 13 122 - -
Vvi12g0684 159 SUPERFAMILY Protein kinase-like (PK-like) 32 145 IPR011009 -
Vvi12g0684 159 ProSiteProfiles Protein kinase domain profile. 47 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0684 159 Pfam Protein tyrosine and serine/threonine kinase 50 132 IPR001245 GO:0004672|GO:0006468
Vvi12g0684 159 FunFam Putative G-type lectin S-receptor-like serine/threonine-protein kinase 9 122 - -
Vvi12g0684 159 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0684 Vvi-Chr12 7794670 7795342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0684 25 135 Receptor kinase-like Gene Family AT4G23160 62.162 7.74e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0684 PK_Tyr_Ser-Thr 8.7e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0684 - - vvi:100267196 229.95