Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0682 ATGTCTCTCTCTCGACAGCTTCCCCTCCGTAGCAGCCTAAACTCCAGGAATCTCTCACTCTCTTCTCCTTTCCCTCACCCACAGCTCTGGGATCCCCCCTCAGGAAAAAAAATCCTCCTCAATGACCAGAAAAACCCTCTTTCTCTGGTTCTCGCCCTCACCCAGAAAGATGAATCCATCCCCTTCTCTCAATGCCGCTCATCCCCTAAAAATCTCCTCCTCTGCCTTTTCCCCGGATTTGCCCTTCTAACCATATCTGCAGCAACCAAAATATCTCCAACGGCCTGCTCAGAGAGCTCCTGCCAGCAGCCCAGTGGCTATATGTCTCCAGAATATGCGCTAGATGGGTTTTTCTCAGTAAAATCTGATGCCTTTAGTTTTGGTGTCGTTGTACTTGAGATCATCAGTGGGAAGAGGAACACAGGATTTTATCAATCTGACCAAGCTATGAGCCTTTTAGGTTATGCATGGAGATTGTGGAAAGAAGACAAGGTGTATGATCTGATGGACCAGACACTAAGTGAAACATGCAACATTAATGAATTCTTGAGGTGTGTAAATGTTGGGTTGTTGTGTGTACAAGAAGACCCAAGTGATCGCCCCACCATGCCCAATGCATTTCTCATGCTCAGCAGTGAGATAGCCACACTTCCAGTACCCCAGCAACCAGCCTTTGTTGTGAGAAGAGGGCCGCCCAGCTTAGCTCCTTCCTCTTCCACCAATCCGAAAACAAGCTCCAACAATGAGATAACTGACAGCTTAGAAGAAGCCTCTCTTGATTATAGGAGGCTGGCGATGAAATTTTCCTGGGAGATACAGCATCTACAGTTCCGTAATGAGACGGCCTCTTGTGGCCATATGTCTCCAGAGTATGCACTATATGGCTTCTTTTCTCTTCAATCCAATGTTTTCTGCTTTGGTGGTACTGTTGTACTTGAGATCATGTGCGGGAAACGGAACACTGGATTTTATCAGTCTGAACAACCTTTAACCCTTCTGGGTTATGCAAGTAGTTCAAATTTCTCAAACCAATCAATACTTTTGGGTCCCTCCCTGCCTCATACTACTGATTTTCTATGTGAAACTGCAACTCTTCCAATTCCTAAACAACCAGCTTTTATTGTGATCAGAGGAGCGGTTTCCAGCACAGCTTCTTCATCTAGTAAACCAGAGACATGTACCAATGAGTTAATAGTCAGCGTAGAAGGCAGATAG 1215 0.4568 MSLSRQLPLRSSLNSRNLSLSSPFPHPQLWDPPSGKKILLNDQKNPLSLVLALTQKDESIPFSQCRSSPKNLLLCLFPGFALLTISAATKISPTACSESSCQQPSGYMSPEYALDGFFSVKSDAFSFGVVVLEIISGKRNTGFYQSDQAMSLLGYAWRLWKEDKVYDLMDQTLSETCNINEFLRCVNVGLLCVQEDPSDRPTMPNAFLMLSSEIATLPVPQQPAFVVRRGPPSLAPSSSTNPKTSSNNEITDSLEEASLDYRRLAMKFSWEIQHLQFRNETASCGHMSPEYALYGFFSLQSNVFCFGGTVVLEIMCGKRNTGFYQSEQPLTLLGYASSSNFSNQSILLGPSLPHTTDFLCETATLPIPKQPAFIVIRGAVSSTASSSSKPETCTNELIVSVEGR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0682 404 Pfam Protein tyrosine and serine/threonine kinase 94 204 IPR001245 GO:0004672|GO:0006468
Vvi12g0682 404 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 90 215 - -
Vvi12g0682 404 SUPERFAMILY Protein kinase-like (PK-like) 99 241 IPR011009 -
Vvi12g0682 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 271 352 - -
Vvi12g0682 404 MobiDBLite consensus disorder prediction 230 252 - -
Vvi12g0682 404 Gene3D Transferase(Phosphotransferase) domain 1 63 217 - -
Vvi12g0682 404 MobiDBLite consensus disorder prediction 233 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0682 Vvi-Chr12 7773613 7776683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0682 283 404 Receptor kinase-like Gene Family AT4G23140 27.500 2.80e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0682 PK_Tyr_Ser-Thr 7.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0682 - - vvi:100267196 304.679