Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0669 ATGGGTCAGGTCATCCGCACCCAGCGTAAAGGTGCCGGATCTGTATTCAAGTCCCACACCCACCACCACAAGGGTCCGTGGAGGTTCTGGAGCCTGGACTTCGGCGAGCAAAACGACTACCTCAAGGGTGTGGTCACCGAGATCATCCACGATCCCGGTCGCGGCACCCCACTCGCTCAAGTTACCTTCCGCCACCCCTTCCGGTACAAACATCAGAAAGAGCTGTTCGTCGCTGCCGAGGGCATGTACACCAGCTAA 258 0.5853 MGQVIRTQRKGAGSVFKSHTHHHKGPWRFWSLDFGEQNDYLKGVVTEIIHDPGRGTPLAQVTFRHPFRYKHQKELFVAAEGMYTS* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0669 85 SUPERFAMILY Nucleic acid-binding proteins 1 84 IPR012340 -
Vvi12g0669 85 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g0669 85 FunFam 60S ribosomal protein L2 1 85 - -
Vvi12g0669 85 Pfam Ribosomal Proteins L2, RNA binding domain 13 84 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vvi12g0669 85 SMART Ribosomal_L2_2 11 85 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi12g0669 85 PANTHER RIBOSOMAL PROTEIN L2 4 84 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi12g0669 85 Gene3D - 1 85 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0669 Vvi-Chr12 7676342 7676599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0669 1 84 Cytoplasmic Ribosomal Protein Gene Family AT2G18020 85.714 7.53e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0669 K02938 - psom:113322022 159.073