Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0663 ATGGGTCGGGTCATCCGCGCCCAGCGTAAAGGTGCCGGATCCGTATTCAAGTCCCACACCCATCACCGCAAGGGTCCGGCGAGGTTCCGGAGCCTGGACTTCGGCGAGCGGAACGGCTACCTCAAGGGTGTGGTCACCGAGATCATCCACGATCCCGGTCGCGGCGCCCCACTCGCTCGAGTTACCTTCCGCCACCCTTTCCGGTACAAGCATCAGAAAGAGCTGTTCGTCGCCGCCGAGGGCATGTACACCGGCCAGTTCGTCTACTGTGGCAAGAAGGCCAATCTCGTTGTTGGCAATGTTCTGCCGCTTAGATCCATCCCCGAGGGTGCCGTTGTGTGCAACGTTGAGCACCATGTGGGTGACCGCGGGGTCTTCGCTAGGGCTTCTGGGGATTATTCGATCGTTGTCAGTCACAACCCTGATAATGGAACCTCCAGAATCAAGCTTCCATCTGGAGCCAAGAAGATTGTGCCCAGTGGGTGCCGAGCTATGATTGGTCAAGTTGCAGGTGGAGGTAGGACTGAAAAGCCAATGTTGAAGGCAGGAAATGCATATCACAAGTTCAGGGTCAAGAGAAACTGCTGGCCTAAGGTACGTGGTGTTGCCATGAATCCTGTGGAGCATCCCCATGGTGGTGGTAACCACCAGCATATCGGTCATGCCAGTACTGTTCGCCGTGATGCCCCTCCAGGGCAAAAGGTTGGTCTTATTGCGGCCAGGAGGACTGGTCGTCTCCGAGGTCAAGCTGCTGCTACAGCTGCAAAAGCAGACAAGGCTTAG 783 0.5683 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGKKANLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVFARASGDYSIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0663 260 Gene3D Ribosomal protein L2, domain 3 170 247 IPR014726 -
Vvi12g0663 260 ProSitePatterns Ribosomal protein L2 signature. 197 208 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 Pfam Ribosomal Proteins L2, C-terminal domain 98 225 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 255 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 SUPERFAMILY Translation proteins SH3-like domain 99 246 IPR008991 -
Vvi12g0663 260 FunFam 60S ribosomal protein L2 170 247 - -
Vvi12g0663 260 SMART Ribosomal_L2_C_2 96 231 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 FunFam 60S ribosomal protein L8 90 169 - -
Vvi12g0663 260 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 PANTHER RIBOSOMAL PROTEIN L2 2 254 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 Gene3D - 1 86 IPR012340 -
Vvi12g0663 260 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Vvi12g0663 260 MobiDBLite consensus disorder prediction 1 24 - -
Vvi12g0663 260 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vvi12g0663 260 FunFam 60S ribosomal protein L2 1 86 - -
Vvi12g0663 260 MobiDBLite consensus disorder prediction 210 230 - -
Vvi12g0663 260 Gene3D - 90 169 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0663 Vvi-Chr12 7565285 7569328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0663 1 258 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 93.798 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0663 K02938 - vvi:100258586 498.049