Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0657 ATGAAAGCTGAGCTAAGAGGGAACCCTCCACCCATTTCTCTACAAAACAGTAGTCTCTTCAACACCCCTCAAAATTCTCTATCAGGTGCACTCAGAGGATGCCTTGGCAGCCTTGATGGAGCATGCATAGAGAAGCTTCTGCTCCACTGCGCAAGTGCCTTAGAGAGCAACGATGTGACTTTGGCTCAACAAGTGATGTGGGTGCTTAACAACGTGGCTTCTTCTATGGGTGACCCTAACCAGAGGCTGGCCTCTTGGTTCTTAAGAGCTCTCATCTCCAGGGCTTCCAGGGTTTGCCCTACTACAGCTATGAACTTCAGTGGCAGCAGTGGTCTTCAGAGGAGGCTGATGACTGTGACTGAGCTCGCCGAGTATGTTGATCTAATCCCTTGGCACAGGTTTGGATTTTGTGCAGCAAATAGTACCATATTTAATGCAATTCAAGGGTGCCCAAGAGTTCACATCTTGGATTTCAGCATCACTCACTGTATGCAGTGGCCTACTCTCATCGACGCGTTGGCAAAGAGGCCTGAGGGGCCTCCTTCGCTCCGAATCACTGTACCGTCTTTCAGGCCACCGGTCCCTCCTTTACTTAATGTGTCGAGTGAAGAAGTCGGCCTCCGTTTGGCGAATTTCGCTAAGTTCAGGGATGTCCCTTTTGAATTCAATGTGATTGAGGACTCATCATCATCAACAATGGGTGAAATGATATCTAGAGAATCCTCTAGTCTCTACTCTGAATCACTCTTAAATCATTTGAATGCTTCCATGCTTGACCTTAGGGATGATGAGGCTTTAGTAGTCAATTGCCAAAATTGGCTACGATATTTGCCGGATGACCAAAAGGGAAGGGCTCAAAATGTTTCTTTGCGTGACACCTTCCTCGAAGTAATCAAAGGCCTTAACCCTCGAATTCTAGTTGTGGTGGACGAGGATGCTGATTTGGGTGCATCAAGTCTCACTTCTAGGATCACTACTTGCTTCAATTACTTTTGGATCCCATTTGATGCCTTGGAGACATTCCTCCCCAAGGACAACCACCAAAGAATAGAGTATGAGGCCGATATAGGCCATAAAATCGAAGACATCATCACCTACGAAGGGCTTCAGAGGATCGAAAGGCTCGAGTCCGGTCCCAAATTATCACAAAGAATGAAGAGCTCCGGATTCCTGAGTATACCATTTTGCGAAGAGACGGTGAGGGAAGTGAAGTTCCTACTAGATGAACATGCGAGCGGGTGGGGAATGAAGAGAGAAGAGGATATGCTGGTGCTCACATGGAAAGGTCACAATTCAATCTTTGCGACAGCTTGGTTCCCAAGTGGGCTTGAGGATTAA 1338 0.4716 MKAELRGNPPPISLQNSSLFNTPQNSLSGALRGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASSMGDPNQRLASWFLRALISRASRVCPTTAMNFSGSSGLQRRLMTVTELAEYVDLIPWHRFGFCAANSTIFNAIQGCPRVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPSFRPPVPPLLNVSSEEVGLRLANFAKFRDVPFEFNVIEDSSSSTMGEMISRESSSLYSESLLNHLNASMLDLRDDEALVVNCQNWLRYLPDDQKGRAQNVSLRDTFLEVIKGLNPRILVVVDEDADLGASSLTSRITTCFNYFWIPFDALETFLPKDNHQRIEYEADIGHKIEDIITYEGLQRIERLESGPKLSQRMKSSGFLSIPFCEETVREVKFLLDEHASGWGMKREEDMLVLTWKGHNSIFATAWFPSGLED* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0657 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 428 IPR005202 -
Vvi12g0657 445 ProSiteProfiles GRAS family profile. 34 439 IPR005202 -
Vvi12g0657 445 Pfam GRAS domain family 44 438 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0657 Vvi-Chr12 7509331 7510668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0657 16 440 GRAS Transcription Factor Family AT3G49950 44.316 2.10e-120 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi12g0657 GRAS 3.4e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0657 - - vvi:100248290 889.412