Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0655 ATGGGCGATGGAGGCGTCGCATGCATGCCTTTGCAGCATATTATGGAAAGGCTTTCAATTCCGGAGGCTTGTTGCGGGGGCAACAACGGCAATGGGTTTAATTCGAACTCGCTTAAATTGGGAGATTCAGAGCCAAAGAAGATGAAGAAGGTTAAGAAAGTGATAAAGAAAGTGGTAAGGAAAGAGGTAAAGAAAGTGCAAGTTGTGAAAGAGGGGGTGAAAAAAGAGGAGTTGGAGAAAGCTGAATTTGGAAAGAGCACTGAGGAAATTGAGAACGGAGAAATTTGTAACGATAAGATAGTAAAAGAGGAAGTAGAAGAAGGTGAATTGGGTACTTTGAAGTGGCCCAAAGGGGAAGTGGAGAATGGGGAATTCGAGCCAGAAAAACCTCGGAGAAGTGATAGTGAGAAGGGAGAGATTGTTGCTGAGAAATCGAGGAAAGGGGAAGTAGAGAAGGGAGAATTTAGATTTAGAAAAGGAGACGGTGAGAAGGCTGATTTTGGATCATGGAGAGGATCAAAAGATGAACTGGAGAAGGGAGAGTTTATACCGGACAGATGGCAGAGAGATGTGGGGAGGGATGGATATGGTTGCTCAAAAATGCGGAGGCATGAGCTGGCTAAAGACAAGGGTTGGAAATTTGAATATGATCATGAACGCGAGAGGACACCTCCTTCTGGTAAGAATGTAAGGATCAGTTCAAAAATTGTAGATGATGAAGGTACGTATAAAACTGAACATAACAGTTCTAAGAACCATGGAAGGGAATTGGTGTCTAGGACTCGCATGAAGCGGTATGGTACTGATTCAGATGGCAGTGAGCGTAAACATCATGGTGAATATGGTGATCATATGGGTTCTAAAATACGTAAGCTTTCTGATGACAGCAACCGCACTGTCCACTTGGAACACTATTCACGCCGTTCAATGGAGAGGTCTTATAGAAATTCTTCTTCATCAAGAATTTCTTCCTCTGACAGGTTTTCTTCCAGGCATTATGAATCTTCTTTCTCATCAAAGGTAGTCCATGACAGGCATGGACGTAGCCCTGTTCATTCTGAGCGGTCCCCACGTGACCGGGCAAGATATCATGATCATCGGGACCGGAGTCCGGCCTATCGGAGTTCCCCCCGACGTGATAGGTCCCCATATGATAGGAGTCGCCACTATGATCATAGAAACCGTAGCCCTGCTCCTACAGAGCGGTCGCCACAAGATCGACCTCGATATCATGAACGTAGGGATCGGACCCCAACCTACCTGGAGCGGTCCCCACTTGATCACAGTAGGCCAAATAATTACAGGGAAGCAAGTTGCAAGGGTGGGGCAGGTGAAAAGCGGCATGGGCAATATGGAAACAAAGTGCAAGAAGAGAAGCTCAACCAAAGGGATGCTAATGGCAGGGATCCGCATTTCTCAGCTAAGGAATCTCAAGATAGAAGCTCTCTGCATACTGTTAATGGTCATGGATCAGATGAGAAAAGTGCCAACCATCAGCCTCACAAGGAAGAGAAGCCTCAAAGTCCATGTGTGAATTTAGAAGAACCTCCACAGATCACTGTTGCTCCTGAAGAGTTGGCTTCTATGGAAGAAGATATGGATATATGTGATACACCACCACATGTCCCATTGGTGGCTGATTCAACCACCGGGAAATGGTTTTACCTTGATCATTTTGGTATGGAACGGGGTCCTTCTAAATTATGTGACCTCAAGAAACTCGTGGAAGAAGGAGTTCTGGTTTCTGATCACCTGATCAAGCATGTAGATAGTGACAGATGGCTAACTATTGAAAATGCAGCTTCTCCATTAGTGCCTGTGAATTTCCCATCCATTGTTTCGGACACTGTAACTCAACTGGTGAGTCCTCCAGAGGCTCCTGGTAATCTATTGGCAGAGGCTGGAGATGCCACAGAGTCCAGCAAACTGCTGGATGAGGAAACACCTGCCACTTTGCTGCAATCAATGTCTTGCAACAATGACAGTTCCACTGCATCTGAGCCATTAGAAGATCTCCAGATTGATGAAAGGGTTAGAGCTTTGTTAAAAGGTTTTACCGTCATTCCTGGCAGGGAGCTGGAGACTCTGGGGGAAGTTTTGCAGGTGTCGTTTGAGCATGCACAGTGGGAGAAATTGGGAGCTGAAGGCTTATCCTGGCATCAACCTCGCATTGGGGAACAGTTTGATCAAAGAACAGACGAATTTTCCAGATACCCAGAAATCACATCAAAAGAAGCTTCAGATTCTAGGTCAAGCACATCCTCTGACAAGGATTATGCCTTTGCCTTTGGTGATTTTAGTGACTGGTTTTCTGCACGATGGGCATCCAAGGGTGGGGACTGGAAGAGAAATGATGAGTCTGCCCAAGATAGATTGTCGAGAAAGAAACTTGTATTAAATGATGGTTACCCACTGTGCCAGATGCCAAAATCTGGGTATGAGGACCCTCGGTGGCATCGGAAAGATGAGTTGTACTATCCTTCACACGGTAGAAAGCTTGACCTCCCAATTTGGGCTTTTTCCTGGCCAGATGAGAGGAGTGATAGCAATAGTGCAAGCAGAGCAAGTCAAATTAAGCCTGTTGTCAGGGGAGTGAAAGGAAGCATGCTACCAGTAGTTAGGATAAATGCATGCGTTTCTGAGCCCCCTGCTAAAGTGCGAGGGAAGGATAGGTACTCTTCGAGGTCTGCTCGGGCTTACTCTTCAACAACTGATGTCAAGAGATCATCTGCAGAAAGTGCTTCTCATTCAAAAAGTGTTAGTGAAAATGATTCTCAGGGTTCTTGGAAGTGCATCACATCCATTAACACTCCAAAAGACCGTCTTTGCACAGCGGAGGACTTACAATTACATTTGGGTGACTGGTATTATCTTGATGGTGCTGGACATGAGCAAGGGCCCTCATCATTTTCAGAGCTCCAGGCTTTAGTTGATCAAGGTTCAATCCAGAAGCATAGCAGTGTTTTTAGGAAAAATGATAAAATTTGGGTTCCAATTACCTCTGCTGCAGATGTTCCTGATGCTGCTGTTAAAATCCAACCACAGAATAATGTAACTTCTACTGATTGTTCTGGACCTTCTCTTGCGCAGTCACTGGCTGGTGCAATTGGTGGAAACAACACAATTTCCAGATCATTGCACAGCTTACATCCTCAATTCATTGGTTATACCTGTGGGAAGCTACATGAATTGGTTATGAAATCATACAAGAGCCGTGAGTTTGCTGCTGCTATAAATGAGGTTTTGGATCCATGGATCAATTCAAAACAGCCAAAGAAAGAAATGGCTAATTCAGCTGTTAGTAACAGTTCTCTTCATGATTTGAACAAATTCCGGACATCAGGAATAAGAGGCCGGTGGCTGGTTGATGGAAGTGAAGATGACTATGAAATGGAAGAAGATGTACTACTAGTTCAGAAGGATGAATCCACATTTGAAGATTTGTGTAGTGATGCTACTTTCTACCAAGAAGACATTGCACTTGCTGAAATGGGCTCAGAAAATTGGGGTTTACTGGATGGTAATGTGCTGGCACGAGTCTTCCATTTTCTGAGAACTGATGTAAAATCCCTTGCTTTTGCTGCTTTGACTTGTAAACATTGGAGAGCTGCAGTAAGGTTCTACAAGGGTGTTTCCAGGCAGGTTGATTTGTCATCTGTTGGCTCTCTCTGCACTGACTCTACAATTTGGAGCATGATAAATGGTTACAACAAGGAAAGGATAACCTCTATGATTCTAATTGGTTGCACAAACATAACACCAGGCATGCTTGAAGACGTTCTTGGTTCTTTTCCTTCTTTATCTTCTATAGATATTAGAGGTTGCAGCCAGTTTTGGGAGTTGGCGGATAAATTTTCAAACCTAAACTGGATCAAGAGCCGAATCCGTGTAATGAAGGTCTTTGAGGAGTCATACTCTAAAATAAAGGCTCTTAAACAGATAACTGAAAGACCATCTGTATCTAAACCATTAAAGGGTATGGGTAGTCATGTTGATGATTCCAGTGAACTGAAAGAGTATTTTGATAGTGTGGATAGGAGAGAATCAGCTAGCCAATCATTCCGTCGTAGCTATTACAAACGTTCAAAACTGTTTGATGCCAGAAGGTCCTCATCAATCCTGTCTAGAGATGCCCGAATGAGGCGTTGGTCCATCAAGAACTCTGAAAATGGATATAAGAGAATGGAAGAATTTCTTGCTTCAAGCCTGAGGGACATCATGAAGGAGAATACCTTTGATTTCTTTGTGCCCAAGGTTGCAGAAATTGAAGACAGAATGAAGAATGGTTATTATGCTGGCCATGGATTGAGCTCTGTCAAAGAGGATATCAGTCGAATGTGCAGGGATGCGATAAAAGCCAAAAATCGGGGTGATTCTGGAAACATGAATCGAATTATTACATTATTTATCCGACTTGCCACATGTTTGGAAGAGGGTTCTAAGTCCTCTAATGGAAGAGAGGAGATGGTGAGGAGGTGGAAAGATGAGTCACCTTCAGGGTTATGCTCTTCTGGGTCCAAGTATAAGAAGAAGCTCAATAAAATAGTGACTGAAAGGAAACACAGGAGCAATGGTGGTTCTGATTATGGAGAGTATGCATCTGATCGAGAAATCAGAAGACGTTTATCCAAATTGAATAAAAAGTCTATGGACTCAGGAAGTGACACATCTGATGACCTTGACAGATCTTCAGAAGGTGGCAGTAGTGGTAGTGAAAGTACTGCTTCAGATACAGAAAGTGACTTGGATTTCCGTTCTGAAGGTGGTGTTGCAGAGTCAAGGGTAGATGGATACTTCACAGCTGATGAGGGTTTATATTCTATGACTGATGACCGGGAATGGGGTGCTCGCATGACTAAAGTTAGCCTTGTGCCTCCTGTCACTAGAAAATATGAAGTCATTGAACAATATGTTATTGTAGCAGATGAGGATGAAGTGCAAAGGAAGATGAAGGTTTCTTTACCTGAGCACTACAATGAGAAGCTCACTGCACAGAAAAATGGCACTGAGGAGTCGGATATGGAGATTCCTGAAGTCAAGGACTATAAGCCTAGAAAACAGCTTGGAGATGAGGTAATAGAACAAGAAGTTTATGGCATAGATCCTTATACTCATAATCTTCTTCTTGACTCAATGCCTGAGGAATTGGATTGGCCACTACTTGAGAAGCATTTGTTTATTGAAGAAGTGCTCCTTTGTACTCTAAATAAGCAAGTTAGGCATTTCACTGGCACTGGAAACACTCCTATGATGTACCATTTGCAGCCTGTTGTTGAAGATATCCAAAAAACTGCTGAAGAAGAACTTGATCTACGAACGTTGAAAATGTGCCAGGGTATTCTGAAGGCCATGAATAGTCGTCCTGATGACAATTATGTTGCTTACAGAAAGGGCCTTGGTGTGGTTTGCAACAAAGAAGGCGGCTTTAGTCAGGAGGATTTTGTTGTTGAGTTTTTGGGAGAGGTTTATCCTGCTTGGAAATGGTTTGAGAAGCAAGATGGAATTCGGTCATTGCAGAAAAACAGTAAAGATCCAGCTCCAGAATTTTACAACATTTATCTTGAGAGGCCAAAGGGTGATGCGGATGGATATGATTTAGTTGTTGTTGATGCGATGCACAAGGCTAACTATGCAAGCCGAATTTGTCACTCATGCAGACCTAATTGTGAAGCAAAAGTTACTGCTGTAGAAGGTCAGTACCAGATTGGAATCTACACTGTACGCCAAATTCAATATGGTGAGGAGATCACCTTTGATTATAACTCAGTCACAGAGAGTAAGGAAGAGTACGAGGCTTCTGTTTGTTTGTGTGGCAGCCAAGTTTGTCGAGGGAGCTATTTGAATCTAACAGGTGAAGGGGCATTTCAAAAGGTACTGAAGGAGTGTCATGGAATTCTGGATCGGTATCAAATGATGTTTGAGGCTTGTGAATTAAATATGGTATCTGAAGAAGACTACATAGACTTGGGAAGGGCTGGCTTGGGCAGTTGTTTGCTTGGTGGGTTGCCTGATTGGCTAATTGCTTATGCAGCTCGCCTGGTGAGGTTTATAAATTTTGAAAGAACAAAGCTTCCGGAGGAGATTTTAAGGCATAGTTTGGATGAAAAGAGGAAATACTTTGCAGATATCAGTCTTGAGGTTGAAAAAAGTGATGCTGAGCTTCAGGCTGAAGGTGTTTACAACCAAAGGCTTCAAAATTTGGCTCTTACTCTGGATAAGGTGAGGTATGTCATGAGATGTGTTTTTGGTGACCCTAAGAAAGCTCCACCTCCTTTGGAGAGGCTCAGTGCTGAAGAAGTAGTTTCCTTCCTTTGGAATGGAGAGGGATCACTAGTTGAGGAACTTCTTCAGTGCATGGCTCCTCATATGGAAGATGGTATGTTGAGTGAGCTCAAGCCCAAGATTCGTGCACATGATCCATCTGGCTCTGATGACATTCACAAAGAACTTCAGAAATCTCTGCTGTGGTTGAGGGATGAAGTTCGAAACCTTCCATGTAATTACAAGTGTCGGCATGATGCAGCTGCTGACTTGATCCACATTTACGCTTATACCAAGTGCTTCTTTAGAGTACGGGAATACAAATCTGTAACTTCTCCACCAGTTTATATTAGCCCTCTTGATCTTGGCCCCAAGTACAGTGATAAACTAGGGTCAGGTATCCAGGAGTATTGCAAAACATATGGTGAGAACTATTGTTTAGGACAGCTGATTTATTGGCATAACCAGACTAATGCTGATCCAGATTGTAACCTAGCCCGAGCGAGTAGGGGTTGTTTGTCATTACCTGACATTGGTTCGTTCTATGCCAAGGTTCAGAAGCCATCACGACAGCGTGTTTATGGCCCAAGAACTCTCAGATTTATGCTGGCAAGGATGGAAAAACAGCCTCAGAGGCAGTGGCCCAAGGATCGGATATGGTCATTCAAGAGTTGTCCAAAAATTTTTGGCAGTCCGATGCTGGATGCCGTGTTGCATAATTCTCCATTGGACAGAGAGATGCTGCATTGGCTGAAGAATAGACCCGCCACATTCCAGGCCATGTGGGATAGATGA 7056 0.4351 MGDGGVACMPLQHIMERLSIPEACCGGNNGNGFNSNSLKLGDSEPKKMKKVKKVIKKVVRKEVKKVQVVKEGVKKEELEKAEFGKSTEEIENGEICNDKIVKEEVEEGELGTLKWPKGEVENGEFEPEKPRRSDSEKGEIVAEKSRKGEVEKGEFRFRKGDGEKADFGSWRGSKDELEKGEFIPDRWQRDVGRDGYGCSKMRRHELAKDKGWKFEYDHERERTPPSGKNVRISSKIVDDEGTYKTEHNSSKNHGRELVSRTRMKRYGTDSDGSERKHHGEYGDHMGSKIRKLSDDSNRTVHLEHYSRRSMERSYRNSSSSRISSSDRFSSRHYESSFSSKVVHDRHGRSPVHSERSPRDRARYHDHRDRSPAYRSSPRRDRSPYDRSRHYDHRNRSPAPTERSPQDRPRYHERRDRTPTYLERSPLDHSRPNNYREASCKGGAGEKRHGQYGNKVQEEKLNQRDANGRDPHFSAKESQDRSSLHTVNGHGSDEKSANHQPHKEEKPQSPCVNLEEPPQITVAPEELASMEEDMDICDTPPHVPLVADSTTGKWFYLDHFGMERGPSKLCDLKKLVEEGVLVSDHLIKHVDSDRWLTIENAASPLVPVNFPSIVSDTVTQLVSPPEAPGNLLAEAGDATESSKLLDEETPATLLQSMSCNNDSSTASEPLEDLQIDERVRALLKGFTVIPGRELETLGEVLQVSFEHAQWEKLGAEGLSWHQPRIGEQFDQRTDEFSRYPEITSKEASDSRSSTSSDKDYAFAFGDFSDWFSARWASKGGDWKRNDESAQDRLSRKKLVLNDGYPLCQMPKSGYEDPRWHRKDELYYPSHGRKLDLPIWAFSWPDERSDSNSASRASQIKPVVRGVKGSMLPVVRINACVSEPPAKVRGKDRYSSRSARAYSSTTDVKRSSAESASHSKSVSENDSQGSWKCITSINTPKDRLCTAEDLQLHLGDWYYLDGAGHEQGPSSFSELQALVDQGSIQKHSSVFRKNDKIWVPITSAADVPDAAVKIQPQNNVTSTDCSGPSLAQSLAGAIGGNNTISRSLHSLHPQFIGYTCGKLHELVMKSYKSREFAAAINEVLDPWINSKQPKKEMANSAVSNSSLHDLNKFRTSGIRGRWLVDGSEDDYEMEEDVLLVQKDESTFEDLCSDATFYQEDIALAEMGSENWGLLDGNVLARVFHFLRTDVKSLAFAALTCKHWRAAVRFYKGVSRQVDLSSVGSLCTDSTIWSMINGYNKERITSMILIGCTNITPGMLEDVLGSFPSLSSIDIRGCSQFWELADKFSNLNWIKSRIRVMKVFEESYSKIKALKQITERPSVSKPLKGMGSHVDDSSELKEYFDSVDRRESASQSFRRSYYKRSKLFDARRSSSILSRDARMRRWSIKNSENGYKRMEEFLASSLRDIMKENTFDFFVPKVAEIEDRMKNGYYAGHGLSSVKEDISRMCRDAIKAKNRGDSGNMNRIITLFIRLATCLEEGSKSSNGREEMVRRWKDESPSGLCSSGSKYKKKLNKIVTERKHRSNGGSDYGEYASDREIRRRLSKLNKKSMDSGSDTSDDLDRSSEGGSSGSESTASDTESDLDFRSEGGVAESRVDGYFTADEGLYSMTDDREWGARMTKVSLVPPVTRKYEVIEQYVIVADEDEVQRKMKVSLPEHYNEKLTAQKNGTEESDMEIPEVKDYKPRKQLGDEVIEQEVYGIDPYTHNLLLDSMPEELDWPLLEKHLFIEEVLLCTLNKQVRHFTGTGNTPMMYHLQPVVEDIQKTAEEELDLRTLKMCQGILKAMNSRPDDNYVAYRKGLGVVCNKEGGFSQEDFVVEFLGEVYPAWKWFEKQDGIRSLQKNSKDPAPEFYNIYLERPKGDADGYDLVVVDAMHKANYASRICHSCRPNCEAKVTAVEGQYQIGIYTVRQIQYGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKVLKECHGILDRYQMMFEACELNMVSEEDYIDLGRAGLGSCLLGGLPDWLIAYAARLVRFINFERTKLPEEILRHSLDEKRKYFADISLEVEKSDAELQAEGVYNQRLQNLALTLDKVRYVMRCVFGDPKKAPPPLERLSAEEVVSFLWNGEGSLVEELLQCMAPHMEDGMLSELKPKIRAHDPSGSDDIHKELQKSLLWLRDEVRNLPCNYKCRHDAAADLIHIYAYTKCFFRVREYKSVTSPPVYISPLDLGPKYSDKLGSGIQEYCKTYGENYCLGQLIYWHNQTNADPDCNLARASRGCLSLPDIGSFYAKVQKPSRQRVYGPRTLRFMLARMEKQPQRQWPKDRIWSFKSCPKIFGSPMLDAVLHNSPLDREMLHWLKNRPATFQAMWDR* 2352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 1481 1495 - -
Vvi12g0655 2351 SMART set_7 1787 1927 IPR001214 GO:0005515
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 312 336 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 233 311 - -
Vvi12g0655 2351 Pfam Protein SET DOMAIN GROUP 2 C-terminal 1932 2351 IPR045606 -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 895 928 - -
Vvi12g0655 2351 CDD F-box_SF 1176 1206 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 1544 1588 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 1563 1577 - -
Vvi12g0655 2351 CDD SET_SETD2-like 1795 1943 - -
Vvi12g0655 2351 Pfam SET domain 1757 1921 IPR001214 GO:0005515
Vvi12g0655 2351 Gene3D SET domain 1792 1952 IPR046341 -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 112 160 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 884 928 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 337 434 - -
Vvi12g0655 2351 Pfam GYF domain 2 955 1001 IPR025640 -
Vvi12g0655 2351 ProSiteProfiles SET domain profile. 1778 1921 IPR001214 GO:0005515
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 1544 1562 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 494 509 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 450 478 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 479 493 - -
Vvi12g0655 2351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR3 375 2351 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 1481 1506 - -
Vvi12g0655 2351 MobiDBLite consensus disorder prediction 218 516 - -
Vvi12g0655 2351 SUPERFAMILY F-box domain 1164 1206 IPR036047 GO:0005515
Vvi12g0655 2351 SUPERFAMILY SET domain 1796 1944 IPR046341 -
Vvi12g0655 2351 Gene3D Ribonuclease Inhibitor 1163 1288 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0655 Vvi-Chr12 7477676 7493201 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi12g0655 SET 1.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0655 K22748 - vvi:100263702 4567.68