LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi12g0650	ATGGTGTTGAAGTACAACCCATTATTGGTTCCGCCTCCAGTATCATCATCGGATGAAGAACCGTCAGATTCCGAAAACGACGTTTCTGACAGAGAAAACGACGTCGCTGACAGCGAAAACGACGTCGTTGACAGTGACAGTGACAACGACGTCTCTGAGGCCGAAAGCGAAGAGAATGACGTTGATAGCGGAGACGACGACGTCGTTGTGGTAGAGGACTCGGAAGATGAGCAGCCGATAGGCTTACTGAAGAAGTCCAAAGCTGGGGCTTCTGCGTCGAAGACTCCCACAGCTGGGGCTTCTTCCTCGAAGGCTCCCACAGCTGGGGCTTCTTCCTCGAAGCCAGCAGCTGAACCCGGGTCGGAATCCAACTCCGATGGGGGTTCCGACGAGGTCCGGAGCGTATCGTCTCCGGATTCTGACGGATTTACTGTCCGTCAGATAGTGCTGAAGCGGGAGAAGCAGGTGGTGGCGGGAACTGCGAGGAGACTCTCCGGGAAGAAGCCAGCGAGGTCCGGGCCCAGTGGGTCGGAGGCGGAGAAAAAGAGGAAGAGGAAGAAGGTGGACGGTGGAGATGGGGCTGAGAGGTCGGAGAAGAAGGAGGTGGACAGTGGGGAAGGAGCTGTTAAGTCGGAGAAGAGGGCGCTGTTTCAAAGGTTGTGGAGCGAGGAGGACGAAATCGCTCTGTTGCAGGGGCTCGGGGAGTACGAGCGGCAGAAAGGAACGGACCCATTTTACGAAATGGATGGGTTCTTTGAATTCATCAAGGGCTCCATCCACATCAGGGTTACGCAGACGCAGCTGGTGAACAAAGCCAGAAGGATGCGGAGGAAGTTCGTGAGGAATGCCATGAGAGGCAAGGATGGGAAGGACCCATCTTTTAAGAGGCCTCATGACCGCAGGGCTTATGAGGTTTCTAAGACAATATGGGGCGATGGGAAGATGAAAATTAGGCCTAAGAGAAGAGGCAGGCCCTTCGGAACCAGCAACAGGGTTGCTTCACGGAAACGTGAAATGATTAAAAAGGAAGATGCTCCTCAGAACACTCAGGAGGAGAAGGGTGGCGAGGATTTTTGGGCTCGCTATCCATGCCTTCGTGACTCTATCGATAGCTTTCCCTCCCTGCCGGAATGGGGAAAGAAACTTATGATGGAGAAGCTCATAGAGACCCCGGAGGAGAAACTGAATGAGCTGGAGGGAAGGTGGAAGGAGCTGGGGCGGGCTGTATGTGAGCTTCATCTAAGCCACTTACAGCTGATTAAGGACCAAGCTAAGGTGGTGCACGAAACAATGACGTCCGACAGTCAGTAG	1311	0.5408	MVLKYNPLLVPPPVSSSDEEPSDSENDVSDRENDVADSENDVVDSDSDNDVSEAESEENDVDSGDDDVVVVEDSEDEQPIGLLKKSKAGASASKTPTAGASSSKAPTAGASSSKPAAEPGSESNSDGGSDEVRSVSSPDSDGFTVRQIVLKREKQVVAGTARRLSGKKPARSGPSGSEAEKKRKRKKVDGGDGAERSEKKEVDSGEGAVKSEKRALFQRLWSEEDEIALLQGLGEYERQKGTDPFYEMDGFFEFIKGSIHIRVTQTQLVNKARRMRRKFVRNAMRGKDGKDPSFKRPHDRRAYEVSKTIWGDGKMKIRPKRRGRPFGTSNRVASRKREMIKKEDAPQNTQEEKGGEDFWARYPCLRDSIDSFPSLPEWGKKLMMEKLIETPEEKLNELEGRWKELGRAVCELHLSHLQLIKDQAKVVHETMTSDSQ*	437

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	174	209	-	-
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	1	209	-	-
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	39	74	-	-
	Vvi12g0650	436	Pfam	Protein of unknown function, DUF573	217	311	IPR007592	GO:0006355
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	317	355	-	-
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	90	143	-	-
	Vvi12g0650	436	PANTHER	BNAANNG10740D PROTEIN-RELATED	12	427	IPR007592	GO:0006355
	Vvi12g0650	436	MobiDBLite	consensus disorder prediction	334	355	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi12g0650	194	401	GeBP Transcription Factor Family	AT4G00390	32.558	3.55e-26	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GeBP	Vvi12g0650		DUF573	6.7e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi12g0650	-		-	vvi:104880887	691.419