Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0649 ATGGGTGTGGGAAGAGCTGGTTTTTCAATTTGTTTTCTGATTCTGCTTTTTGTGTTGGTTGTGGGGAGCTCGGAGGCCAAGAGGAGGACGGCTAAGACCTTTTTTTCCAATAGAGCTTATGAGGTTGCTATGGAGATAGATGAGGACACGGCAGAACAGGTGTGGATTCAATGCAGGCAAGAACTGATGGAAATGAATTATGCTGTTGAGGAGTTTGATTTGTGTTTCATTGAGGAGGAAATGAGCGGCTCTAGTGAAATGAACCCGAAAGCAGCATTGTTGTTAAAAAGAAATGTGCACAAAGCTATCAATAGCTTGGCTCCCCAAATGAAAGAATCTCTTTTGGACTGTTTAAGAACAAAAAATCTTATCTTCAGCGTTTCAGGTGATGAGGTTCCCTCTAAGAGTTGGTTCATCAAGTACCTTGAGCTGCTCTTTGGTTGGTCTAATCGTTCCAGAAGACATTTGGCGAATGTGCCACAACTAACAATAGAGACATCCCCTGATTCAGCTCCAGGCCCAGATCAAGACCCTGCATTAGTAGATTCAGGGATTTATTATGGTCCTGCACCAGGTTCTTCACAGCAGTCTCTTAGCATAAATTCAAGTGGCAAAGACTTCAGTGATAATTCAAACCTCATAGGACAGCATCCCTCTTTTTCCACTGATGATCATAACTCTGTATTAGAAGCTACTGCTGGTGGACCAACCCCACTTCCTCTTTTAAAACCTCCTCCAGGAAGACTTGCTCCTCCTCATGCTCTCGCCCCTGCTCTTGCTCCTGCTCCTACTCCTGCTCCTCCACCTCCTGGACCACCACCTCCTCCCCCACCTAAACCTCCTGCCAAGCCTGGTCCTCGTCCCCCACCACCGCCAAAAATTGTTCGTCCTCCACCTATGCCACCAAAATCATCAGCTGCTAATTCAAAGTTGCCCCCTCTGGGACCACATCATCGAAAGAATACTGCTTCTGGTGAGGGAGATGATGTAACAGGTGAATCTGATGCTCCAAAAACCAAGTTAAAGCCCTTCTTCTGGGATAAGGTTCTTGCCAGCCCTGATGAGTCCATGGTCTGGCATGAGCTAAGTGCGGGATCATTCCAGTTCAATGAGGAGATGATAGAATCCCTATTTGGTTATACCAATGTGGAAAAGAACAAAAATGATAGCAAGAAAGAATCAGCATCCTCAGAACCCCAGTATATACAAATAATTAACCCAAAGAAAGCACAGAATTTATCAATTCTTCTACGAGCACTGAATGTGACAACAGAAGAAGTTTATGATGCCCTTAAGGAAGGCAATGAGCTTCCTGCAGAGCTCCTCCAAACTTTATTGAAGATGGCACCTACACCAGATGAAGAACTAAAGCTCAGGTTATTCTCTGGCAATACTTCTCAACTTGGCCCTGCAGAACGATTCCTCAAAGTTTTGGTTGAAATCCCATTTGCATTTAAGCGGATGGAAGCATTACTGTTCATGAGTTCTCTTCAGGAGGAAGTGTCTGGCATCAAAGAGTCATTTGCTGCTTTAGAGGTTGCTTGCAAGGAACTCAGAAACAGTAGGCTGTTCCTAAAGCTCTTGGAAGCAGTTCTGAAAACTGGAAACCGCATGAATGATGGTACTTTCCGTGGTGGAGCCCAGGCCTTCAAGCTTGACACACTCTTGAAGCTGTCTGATGTAAAAGGAATTGATGGCAAGACCACCCTCTTACACTTTGTTGTCCTGGAAATCATCCGGTCTGAAGGCATAAGAGCAGCCCGCGCAGCAAGGGAGAGCAAGAGCTTTTCCAGCTTGAAATCAGACGATTTAACTGAGGATCCCAGCAATGAGACAGAACACTTTCGCACCCTTGGTCTTCAGGTGGTCTCAGGCTTAAGTAATGAACTTGAGAACGTTAAAAAGGCAGCGATTATAGATGCTGATAGCTTAACCTCAACAGTGTCCAATCTAGGCGATTCACTGCTAAAAACCCGAGACTTTCTAAGAAAAGATATGAGTAATTTACAGGAAGAAAGTGATTTCCACCGTTCACTTGATAGTTTTGTGGAGCGCGCAGAAGTTGATATCACATGGATGCTGGAGGAAGAAAACAGGATAATGACTCTGGTGAGGGGCACGGTTGACTACTTCCATGGGCATTCAGGGAAGGATGAGGGATTGCGTTTGTTTGCAATTGTTCGAGATTTCTTGAAAATTTTAGACAAGGTCTGCAATGAGGTGAGGAAATCAACCATAAAGCCAACAAAGAATCCAAAGACTGAGGCTCCAACAGTATCAGCTCACCCAGAAGTTCATCAGTCATCTTTGCAAGACATGCGCCAAAAACTATTTCCTGTGATTGCAGAACGGCGGATGGATAATAGTTCCAGTTCCAGTTCAGATGATGACAGCCCATCTTCTTAG 2406 0.4476 MGVGRAGFSICFLILLFVLVVGSSEAKRRTAKTFFSNRAYEVAMEIDEDTAEQVWIQCRQELMEMNYAVEEFDLCFIEEEMSGSSEMNPKAALLLKRNVHKAINSLAPQMKESLLDCLRTKNLIFSVSGDEVPSKSWFIKYLELLFGWSNRSRRHLANVPQLTIETSPDSAPGPDQDPALVDSGIYYGPAPGSSQQSLSINSSGKDFSDNSNLIGQHPSFSTDDHNSVLEATAGGPTPLPLLKPPPGRLAPPHALAPALAPAPTPAPPPPGPPPPPPPKPPAKPGPRPPPPPKIVRPPPMPPKSSAANSKLPPLGPHHRKNTASGEGDDVTGESDAPKTKLKPFFWDKVLASPDESMVWHELSAGSFQFNEEMIESLFGYTNVEKNKNDSKKESASSEPQYIQIINPKKAQNLSILLRALNVTTEEVYDALKEGNELPAELLQTLLKMAPTPDEELKLRLFSGNTSQLGPAERFLKVLVEIPFAFKRMEALLFMSSLQEEVSGIKESFAALEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVLEIIRSEGIRAARAARESKSFSSLKSDDLTEDPSNETEHFRTLGLQVVSGLSNELENVKKAAIIDADSLTSTVSNLGDSLLKTRDFLRKDMSNLQEESDFHRSLDSFVERAEVDITWMLEEENRIMTLVRGTVDYFHGHSGKDEGLRLFAIVRDFLKILDKVCNEVRKSTIKPTKNPKTEAPTVSAHPEVHQSSLQDMRQKLFPVIAERRMDNSSSSSSDDDSPSS* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0649 801 PANTHER FORMIN-RELATED 167 795 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi12g0649 801 MobiDBLite consensus disorder prediction 785 801 - -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 746 770 - -
Vvi12g0649 801 SUPERFAMILY Formin homology 2 domain (FH2 domain) 273 746 - -
Vvi12g0649 801 PRINTS Proline rich extensin signature 269 281 - -
Vvi12g0649 801 PRINTS Proline rich extensin signature 281 302 - -
Vvi12g0649 801 PRINTS Proline rich extensin signature 234 246 - -
Vvi12g0649 801 PRINTS Proline rich extensin signature 249 265 - -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 238 306 - -
Vvi12g0649 801 SMART it6_source 331 749 IPR015425 -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 321 338 - -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 782 801 - -
Vvi12g0649 801 Pfam Formin Homology 2 Domain 333 734 IPR015425 -
Vvi12g0649 801 ProSiteProfiles Formin homology-2 (FH2) domain profile. 331 760 IPR015425 -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 164 338 - -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 189 228 - -
Vvi12g0649 801 MobiDBLite consensus disorder prediction 750 770 - -
Vvi12g0649 801 Gene3D Formin, FH2 domain 336 762 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0649 Vvi-Chr12 7386025 7390581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0649 333 787 FH2 protein (formin) Gene Family AT5G54650 66.449 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0649 - - vvi:100258466 944.495