Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0648 ATGGGCCGGAAAAAGCTTGTGATGCAGAAACTAGGAAATCCAAGCTCTCGTCAAGTAACATTCACGAAACGCAAAGATGGGATTGTCAAGAAGGCCACTGAATTATCTATCTTATGTGGTGCAGATGTTGGTCTTATAATGTTTTCTCCTAAAGGTCGATCGATCACTTTTGCTAGCGGTGGAAGGGTTGAGGATATCTTTATTCGTTGGATTGCCCAAGCTGCTGAATTAACTGGACAAGGGCTCTTGAGGAGAGTCTATATGAAATCAAAGAACAAATACTTGCAGCAGAAGAAAAGATGA 303 0.4158 MGRKKLVMQKLGNPSSRQVTFTKRKDGIVKKATELSILCGADVGLIMFSPKGRSITFASGGRVEDIFIRWIAQAAELTGQGLLRRVYMKSKNKYLQQKKR* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0648 100 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 57 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Vvi12g0648 100 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi12g0648 100 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Vvi12g0648 100 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0648 Vvi-Chr12 7381525 7382485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0648 1 71 Type I MADS-box Gene Family AT1G22130 53.521 4.83e-22 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi12g0648 SRF-TF 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0648 - - vvi:100854256 161.384