Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0645 ATGGCGCTCGATTCCTCAGAGAACTCCAATTGGCTCTTTGATTATGGCTTGATGGAAGATATCACCGTTCCCGGCGGCGAATTTCCGGAACCGACGCCAGGAACCGGATTCTCCTGGCCCTCTCAAGCTCTCAAAAGTTCCTCTAGTGTAAGTTTGGAAGCTGATTGTTCATTTGGGGATTCAGATGGGCTAAAAGAACTTGGACCCCGAAAACGGTTGAAGCATGAATCATGTGGTGCAACTGGCACCAAAGCTTGCCGGGAAAAATTGCGGAGGGATAGGCTGAATGAGAGGTTCTTGGAATTGGGTTCTATCTTGGAGCCTGGAAGGCCACCCAAAACGGACAAGGCTGCTATTCTGAGTGATGCTGTTCGAATGGTGACTCAATTACGAAGTGAAGCACAGAAGCTGAAGGAGTCAAATGGGGATTTGCAAGAGAAGATTAAGGAATTGAAGGCTGAGAAAAATGAGCTTCGGGATGAGAAGCAAAGGTTAAAAGCCGAAAAGGAGAAGCTGGAGCAGCAAGTCAAAGCCATTAGTGCACAGCCAGGCTTTCTGCCTCATCCTTCTGCAATGCCAGCTGCATTTGCTGCCCAAGGCCGAGCACCTGGCAACAAGCTGATGCCTTTCATTGGTTACCCTAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCAGTTGACACATCACAGGATCATGTTCTCCGTCCCCCAGTGGCTTAA 723 0.4938 MALDSSENSNWLFDYGLMEDITVPGGEFPEPTPGTGFSWPSQALKSSSSVSLEADCSFGDSDGLKELGPRKRLKHESCGATGTKACREKLRRDRLNERFLELGSILEPGRPPKTDKAAILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAISAQPGFLPHPSAMPAAFAAQGRAPGNKLMPFIGYPSVAMWQFMPPAAVDTSQDHVLRPPVA* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0645 240 CDD bZIP 145 177 - -
Vvi12g0645 240 Gene3D - 71 128 IPR036638 GO:0046983
Vvi12g0645 240 SMART finulus 85 136 IPR011598 GO:0046983
Vvi12g0645 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 85 155 IPR036638 GO:0046983
Vvi12g0645 240 PANTHER BHLH TRANSCRIPTION FACTOR 6 240 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vvi12g0645 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 130 IPR011598 GO:0046983
Vvi12g0645 240 CDD bHLH_AtILR3_like 84 159 - -
Vvi12g0645 240 Gene3D arf6 gtpase in complex with a specific effector, jip4 129 182 - -
Vvi12g0645 240 Coils Coil 120 182 - -
Vvi12g0645 240 FunFam Transcription factor bHLH34 70 128 - -
Vvi12g0645 240 Pfam Helix-loop-helix DNA-binding domain 83 130 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0645 Vvi-Chr12 7357990 7360959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0645 5 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 66.527 4.29e-103 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi12g0645 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0645 - - vvi:100251621 468.003