Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0640 ATGTCTCAAGCAGAGACTGTAAAACTTGTGTCACTGAGGCAACCAAAGAGTTGCACAACCGCTGTCCATACAACAAAGGAGCGATCATTTGGTACGATAATTCTCTTTAAGTACTCAAATGTGAAGTTCTTTGGAGAAATCGACAACAAAAACAAGTTCTACATGTATAACGTACAAAGTGTTGATGATCCCACTTCATTTAACGTGAAAATAAAGGAGTTGTTGAGAAGCTTGTCCAATAAAGCATATGGTAGTCCAGTGTTGTTTGCTACGGGTGAGCTTGTGCTGGAAGAGTCTATGAAACTCTATGGTTTGGCGCAATGCACTAGGGATCTTTCAAGCCTTGATTGTAAGAAGAGCCTTGATGATGCAGTAAGTGAACTCCCAAGCTATTGCGATGGAAAACGAGGGGGAAGAGTTGTTGGTGGGAGTTGTAATATGTATTTCTCAAGATTTGCCACCTCCCTCTACCTGCTATCCTTTGCTTTCCTTCTCCAAACCATCGCTGGAACTGACCCTCTGTACCATTTCTGTTCAAGCTCTCAGAAGTTCATAGATAATGGCACATATGAGACCAACTTGAACAAGCTCATGGGCTATCTCTACTTAGCAGCTCCTCCCACAGGTTTTAGGAAAGGTTCAGTTGGTGAGAACAATGACCAAGTGAACGGGCTTGCTCTCTGTCGAGGTGATGTCTCAAACACAGACTGCAAAGCCTGTATTACCGAATCAAGCAGCGAAATCCGCAAACGCTGCCCAGACAACAAAGCTGCAATCATATGGTATGATTACTGCCTTTTGAAATACTCAAACGTGAATTTCTTTGGTCAAGTTGATCATCAGAACATGTTCTATATGTGGAACTTGAATAATGTAAGTGATCCTGATTCATTTAATCAAAAGACAAAGGAGCTGCTAAGCAACCTAGCCCAGCAAGCTTTTAACGCCATGAAAATGTATGCCACCGGAGAACTAGAGCTGGAAGAATCCGAAAAACTATACGGATTGACTCAATGCACCAGGGATCTGTCCAGCAGTGATTGTAAGAAGTGTCTTGATGATGCAATAAGTAAACTTCCAAACTGTTGTGATGGCAAAGAAGGAGGGAGGGTTGTTGGGGGGAGTTGCAACATAAGATATGAGATTTACCCCTTTGTCAATTCTTAG 1167 0.4233 MSQAETVKLVSLRQPKSCTTAVHTTKERSFGTIILFKYSNVKFFGEIDNKNKFYMYNVQSVDDPTSFNVKIKELLRSLSNKAYGSPVLFATGELVLEESMKLYGLAQCTRDLSSLDCKKSLDDAVSELPSYCDGKRGGRVVGGSCNMYFSRFATSLYLLSFAFLLQTIAGTDPLYHFCSSSQKFIDNGTYETNLNKLMGYLYLAAPPTGFRKGSVGENNDQVNGLALCRGDVSNTDCKACITESSSEIRKRCPDNKAAIIWYDYCLLKYSNVNFFGQVDHQNMFYMWNLNNVSDPDSFNQKTKELLSNLAQQAFNAMKMYATGELELEESEKLYGLTQCTRDLSSSDCKKCLDDAISKLPNCCDGKEGGRVVGGSCNIRYEIYPFVNS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0640 388 Gene3D - 171 274 IPR038408 -
Vvi12g0640 388 Gene3D - 49 152 IPR038408 -
Vvi12g0640 388 Gene3D - 279 385 IPR038408 -
Vvi12g0640 388 ProSiteProfiles Gnk2-homologous domain profile. 49 154 IPR002902 -
Vvi12g0640 388 FunFam Cysteine-rich receptor-like protein kinase 28 174 273 - -
Vvi12g0640 388 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 38-RELATED 155 387 - -
Vvi12g0640 388 ProSiteProfiles Gnk2-homologous domain profile. 280 385 IPR002902 -
Vvi12g0640 388 ProSiteProfiles Gnk2-homologous domain profile. 172 274 IPR002902 -
Vvi12g0640 388 FunFam Cysteine-rich receptor-like protein kinase 10 282 385 - -
Vvi12g0640 388 Pfam Salt stress response/antifungal 178 271 IPR002902 -
Vvi12g0640 388 Pfam Salt stress response/antifungal 62 150 IPR002902 -
Vvi12g0640 388 Pfam Salt stress response/antifungal 291 382 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0640 Vvi-Chr12 7340990 7343195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0640 174 386 Pollen Coat Proteome AT4G20670 42.793 2.73e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0640 - - vvi:100255186 506.523