Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0637 ATGATGAAATCTCATGAATTCTGTGCTCTTCCTATACTATTTTCTTGTCTTGTTTGTTTTCTAACAAAAGCCCAAGCCCAAGTTTATGTTTACTGTGATGCTGCTACTAATTACACTTCTGGAAGTGTCTATGAGAAAAACCTGAACCTTGTCCTCACTTCTCTTGCGGCCAGTGCTTCTATAACAGGCTTCAACATGACTACCGCTGGCCAGGATCCAGATGTAGCTTATGGCCTTATACAGTGCAGGCCTGATATCTCTAAAGGGGATTGCCAAACTTGGTCAAGTACCTCAGCAGTAGAGATCAGTCAACGATGTCCTAACCAGAGGGAAGCTTTTATACAATATGATAATTGTTCGTTACACTATTCAGACTGGCGCTTCTTCTCAACTGTCAACAGTGTTCCACGAATAGTTCTTCTTAATGCGCATAATGTGACCAACCCAGTTCTTTTCAATGATCAGTTGGAAAGTTTGTTTGAGAATCTCTCATCCCATGCTGCATCCAATCCTTCCCTATTTGCTGTTGGAAGCATCCTTTACACGGGCTCTACTAATATATATGGTATGATGCAGTGCACCAGAGACTTAACAGAAAACAACTGCTTGGGATGTCTACAAGATATCAGAAAGTATATTCCAAGTGATGGATCACAAGGTGGTCAGGTAATATCCCTGAGTTGCAGTTTAAGGTATGAGATTTCTCCATTTTTTCTGTTGCCACCACCACCTCCTCCAATCAGAGTAGCATCCCCTCCACCGCCTTTTCTTGGGGGCAATTCAACTCCTACTGGAACGAGTGATGGTGAAAACCAGACTCTGAGAACCATTGTTATTGTGGCTATCCCTGTGGCTATTGCATGCGTAGTATCTATAATCTGTGGATGCTTCTTGTGGAGAACCAGAAGAAAGATCAAGAAAATTAGTTTCGATGGTGTTTATGAAGGTAGCAATACAAGTACAGAATCCCTTCTGATTGATCTAACCACACTTAAAGTTGCCACAAGAAATTTTTCTGATGAGTGTAAACTCGGAGAAGGTGGTTTTGGTCCAGTTTATAAGGGAGAACTATCCGATGGGCGGGAAATAGCAGTGAAAAGGCTTTCGAGTACCTCAGGGCAAGGACTAGAGGAACTAACAACAGAAGTGATGTTGGTCACTAAGCTTCTGCACAAGAATCTGGTAAAGCTGTTGGGCTTTTGTTTAGAAGAAGAAGAGAAGCTACTTGTCTATGAATACCTGCCTAATGGAAGCTTGGATAAGATTTTATTTGATCATAGCAGAAGATTTAGTCTTGAATGGGAAAGACGGTACAAGATCATTGTTGGAATTGCTCGAGGCCTTCTTTATCTGCATGAAGATTCTCAGCTCAGGATCATTCATAGGGACATGAAAGCTAGTAATATTCTGTTAGATGAGCATATGAATCCCAAAATTTCAGACTTTGGTCTGGCAAGACTATTCCATGGAAGCCAGACTCAAGGAAATACAAATCGGATTGCTGGCACTTGTGGATACATGGCACCAGAGTATGCCAAAAATGGGCATTTCTCAACTAAATCCGACGCCTATAGCTTTGGTATTTTAGTTCTGGAAGTCGTGGCAGGTCAAAAGAACTCGGGTTTCCACAATTCAGTGAACCTTCAAAATCTTGCATGGCAGCATTGGGCTAATGGAACTGCACTGGACCTTGTGGACCCAAGACTAGGCGATCAATGGCCAAGACATGAAGTTTTGGAGTGCATCCAGACTGGGCTACTCTGCATTCAGGAGGTTGCTGCTGATAGACCTTCCATGTCAGAGATTGTCCTCATGCTTAGTAGCCACACTATAACCACCCCTGTTCCTTTGCACCCACCAGTTCTTGCTGGAAGCAGAAATTTTGAATCATCTGAGACAATGGATGCTACTAAGTTTGATCAGTATAATCGAAAAGCAATGCAGCAATCTGTAAATGATGTTGCCATCAGTGAACTAACTCCTCGTAATTGA 1992 0.4232 MMKSHEFCALPILFSCLVCFLTKAQAQVYVYCDAATNYTSGSVYEKNLNLVLTSLAASASITGFNMTTAGQDPDVAYGLIQCRPDISKGDCQTWSSTSAVEISQRCPNQREAFIQYDNCSLHYSDWRFFSTVNSVPRIVLLNAHNVTNPVLFNDQLESLFENLSSHAASNPSLFAVGSILYTGSTNIYGMMQCTRDLTENNCLGCLQDIRKYIPSDGSQGGQVISLSCSLRYEISPFFLLPPPPPPIRVASPPPPFLGGNSTPTGTSDGENQTLRTIVIVAIPVAIACVVSIICGCFLWRTRRKIKKISFDGVYEGSNTSTESLLIDLTTLKVATRNFSDECKLGEGGFGPVYKGELSDGREIAVKRLSSTSGQGLEELTTEVMLVTKLLHKNLVKLLGFCLEEEEKLLVYEYLPNGSLDKILFDHSRRFSLEWERRYKIIVGIARGLLYLHEDSQLRIIHRDMKASNILLDEHMNPKISDFGLARLFHGSQTQGNTNRIAGTCGYMAPEYAKNGHFSTKSDAYSFGILVLEVVAGQKNSGFHNSVNLQNLAWQHWANGTALDLVDPRLGDQWPRHEVLECIQTGLLCIQEVAADRPSMSEIVLMLSSHTITTPVPLHPPVLAGSRNFESSETMDATKFDQYNRKAMQQSVNDVAISELTPRN* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0637 663 Gene3D Phosphorylase Kinase; domain 1 300 413 - -
Vvi12g0637 663 Pfam Salt stress response/antifungal 147 233 IPR002902 -
Vvi12g0637 663 Pfam Salt stress response/antifungal 32 125 IPR002902 -
Vvi12g0637 663 Gene3D - 137 237 IPR038408 -
Vvi12g0637 663 Gene3D - 24 128 IPR038408 -
Vvi12g0637 663 SMART serkin_6 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0637 663 FunFam Cysteine-rich receptor-like protein kinase 10 300 413 - -
Vvi12g0637 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vvi12g0637 663 Gene3D Transferase(Phosphotransferase) domain 1 414 613 - -
Vvi12g0637 663 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 661 - -
Vvi12g0637 663 FunFam cysteine-rich receptor-like protein kinase 10 414 613 - -
Vvi12g0637 663 ProSiteProfiles Gnk2-homologous domain profile. 134 237 IPR002902 -
Vvi12g0637 663 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0637 663 Pfam Protein tyrosine and serine/threonine kinase 342 605 IPR001245 GO:0004672|GO:0006468
Vvi12g0637 663 ProSiteProfiles Gnk2-homologous domain profile. 26 128 IPR002902 -
Vvi12g0637 663 SUPERFAMILY Protein kinase-like (PK-like) 320 635 IPR011009 -
Vvi12g0637 663 CDD STKc_IRAK 344 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0637 Vvi-Chr12 7332038 7335016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0637 13 662 Receptor kinase-like Gene Family AT4G05200 41.753 9.48e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0637 PK_Tyr_Ser-Thr 4.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0637 - - vvi:100243173 1268.45