Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0636 ATGGCTCCAGAGTGTGTGATGCATGGCCAATTCTTGCCCCAATCAGATTTATATTGCTTTGGAATTTTACTTGTGGAAATTGTGAGTGGCATGAGAAATGAATGTTCAAATCAACCAGAGCATGCAGCGGACCTTGGAGAACTGCCTGATGGTCGAGAAATAGCTGTGAAAAGGCTTTCAAGTAGCTCAGGGCAAGGACTTGAAGAACTAAGAACAGAAGTAACGCTGGTCACCAAACTACTTCACAGGAATCTGAGATTTTGA 264 0.4318 MAPECVMHGQFLPQSDLYCFGILLVEIVSGMRNECSNQPEHAADLGELPDGREIAVKRLSSSSGQGLEELRTEVTLVTKLLHRNLRF* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0636 87 Gene3D Phosphorylase Kinase; domain 1 49 86 - -
Vvi12g0636 87 Gene3D Transferase(Phosphotransferase) domain 1 1 48 - -
Vvi12g0636 87 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 46 85 - -
Vvi12g0636 87 SUPERFAMILY Protein kinase-like (PK-like) 1 39 IPR011009 -
Vvi12g0636 87 Pfam Protein tyrosine and serine/threonine kinase 1 34 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0636 Vvi-Chr12 7326438 7330722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0636 46 85 Receptor kinase-like Gene Family AT4G21230 70.000 6.83e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0636 PK_Tyr_Ser-Thr 1.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0636 - - vvi:100263707 75.8701