Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0635 ATGACAAGCCTAGTGTCGCAGGTTGCTTTTGATCCTTCAAGGCACATGTTTGCTACAAAAGAAGTAAATATTACTGCGTATCAAACTTTGTATGTCCTGGGGCAATGTACTCTGGACTTGTCTGGCAGTAGTTGCTATAGCTGCCTTCTTAATTCTGTGGCTTATCTTCCTACTTGCTGTGATGGGAAGATAGGGGGAAGGGTTCTTCGAGCAAGCTGTAATGTAAGGTATGAGCTGTACTTATTCTATACAAGATCTGCCATTGCACCAACTCCTTCAGCCATTCCTCATCCAACAGTCAGAACTACTGATGAAGTTGGAAATGAATCTCAGCCTGTTGGGTCCTTGCAATTTGACTTGGATACTATTAGAGCAGCCACAGATAACTTCGCAGATGCAAATAAAATAGATGAAGGTGGATATGGTACAGTTTACAAGGGCATACTTTCAAATGGAGAAGAAATTTCTGTCAAAAGGCTCCTAGGAGATTCAGGTGAAATTGCAGAAGCATTCAAGAAAGAGGTTTTTCTCATGGCAAAGCTTCAACACAGAAACCTTCAGAGACTTTTGGGATTTTGCTCAGGAGGAGGAGAAAGGATGCTCATCTATGAGTTTGTCTCCAATGACTGCCTGGATTCCTTACTATTCGACCCAGAAAATAGAGCACAGTTGGATTGGCCAATGCGCCTCAAGATCATTGAAGGCATTGCTCGAGGACTTCTTTACCTACATGATGATGCACCACTCAGGATCATTCATTGTGATCTTAAAGTTTCCAATATACTGCTAGATGGGAAGATGAATGCCAAAATTTCAAACTTTGGCATGGCAATAGGTTGGGTAGATGACCAGACCCTAGTGAACCCTCATAGAATTGCAGGAACATATGGTCACTTTGCTCCAGAGTGTGTGATGCATGGTCAATTCTCATCTCAATCAGATGTGTATAGCTTTGGCGTATTGCTTCTGGAAATTGTGAGTGGCAAGAGAAATGAATGTTCTAATCAACCAGAGAATGCAGAAAACCTTTTAAGTAATGCTTGGAGACACTGGAATGAAGGGCAGGCAATGGAGCTGATTGATCCAACTCTTAGCCAATGCTGTCAAAATACCGAAGTAATGAAATATATCCACATTGGAATACTATGTGTTCAGGAGGATGCAGCAGACAGACCTTCAATGGCATCAGTGGTTCTCATGCTTAGTGGTGATCCTTCTACTCTTCCGATGCCTCGGTTACTGCCACCTTCTGTTCCTCATAGAGCAGAGCCACAGAGGACAGCTGGTGAACTTGAGCCATCAGCAAGGGAATTGGGTGAATACAATGCAGAAATCATTTCTATAGATGAAGTCACATTTTCAGAGTTGAGTCCTAGATAA 1380 0.4246 MTSLVSQVAFDPSRHMFATKEVNITAYQTLYVLGQCTLDLSGSSCYSCLLNSVAYLPTCCDGKIGGRVLRASCNVRYELYLFYTRSAIAPTPSAIPHPTVRTTDEVGNESQPVGSLQFDLDTIRAATDNFADANKIDEGGYGTVYKGILSNGEEISVKRLLGDSGEIAEAFKKEVFLMAKLQHRNLQRLLGFCSGGGERMLIYEFVSNDCLDSLLFDPENRAQLDWPMRLKIIEGIARGLLYLHDDAPLRIIHCDLKVSNILLDGKMNAKISNFGMAIGWVDDQTLVNPHRIAGTYGHFAPECVMHGQFSSQSDVYSFGVLLLEIVSGKRNECSNQPENAENLLSNAWRHWNEGQAMELIDPTLSQCCQNTEVMKYIHIGILCVQEDAADRPSMASVVLMLSGDPSTLPMPRLLPPSVPHRAEPQRTAGELEPSARELGEYNAEIISIDEVTFSELSPR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0635 459 Pfam Protein tyrosine and serine/threonine kinase 134 398 IPR001245 GO:0004672|GO:0006468
Vvi12g0635 459 SMART serkin_6 130 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g0635 459 Gene3D - 1 82 IPR038408 -
Vvi12g0635 459 FunFam Putative LRR receptor-like serine/threonine-protein kinase 98 205 - -
Vvi12g0635 459 SUPERFAMILY Protein kinase-like (PK-like) 113 420 IPR011009 -
Vvi12g0635 459 MobiDBLite consensus disorder prediction 416 435 - -
Vvi12g0635 459 Gene3D Transferase(Phosphotransferase) domain 1 206 407 - -
Vvi12g0635 459 Gene3D Phosphorylase Kinase; domain 1 98 205 - -
Vvi12g0635 459 ProSiteProfiles Gnk2-homologous domain profile. 1 82 IPR002902 -
Vvi12g0635 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vvi12g0635 459 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 458 - -
Vvi12g0635 459 Pfam Salt stress response/antifungal 17 80 IPR002902 -
Vvi12g0635 459 FunFam cysteine-rich receptor-like protein kinase 10 206 408 - -
Vvi12g0635 459 ProSiteProfiles Protein kinase domain profile. 130 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0635 Vvi-Chr12 7313413 7315658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0635 9 459 Receptor kinase-like Gene Family AT4G23140 42.524 2.29e-129 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi12g0635 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0635 - - vvi:100263707 911.368