Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0631 ATGGAGCCTATCTGTGAGTTTTGTGGCGTGGTGAGGGCAGTAGTTTACTGCAAGTCGGATGCTGCTAGACTTTGCTTACATTGTGACAACTCTGTTCACTCTGCTAATGCTCTGTCGCGCAGGCATCTGCGTTCCCTGCTATGTGATAAATGCAATTTGCAGCCTGGAATATACCGGTGTATGGATGAGAAATTGTGTATATGTCAAGCTTGTGACTGGATTGGCAATGGCTGCTCAGCCCCGGGACATAGACTCCAGTCATTGCAGTTCTATATGGGTTGTCCTTCTTTGTCTGATTTCTCAAGGCTTTGGTCTTCAGTTCTTGATTTGCCCAGTGCCACCGGTCTTAAGGCTGGATGGGGTTCAATGAATTCAGTGGCTGTGGATGAGAATTGTGTGAGCCAGTGCTTGGAGCCTAAAGACAATGAAGGATCCCTTGTGTTGGGGTGTAACAAGTTGAATGAACAAAAGCCCTGGGTGGGTGCATCTTCCTCAATGCCTGGTGCATACTCCTCAATGCCACCTGATCGGAAGTTCACTTCATCATACTGTAAAGACCAAACACCTTTCTTGCCAGATGAGTCGAATCCATCAAAGGTTATTTCTTTTATTTTCTCACTACTGATCAACCAGTCTCAATCTCAGGGTTGTTCCAATTTCAAGGATCTTGGGCTTAATGAAGGTGGTGATCTCTGTCAGGGCATCAACATGGATGATGTTGCAGTAAACTTTGAGAACAGTGATGAGATGATCGGTTCCTCACAAGGTCATTCTACATGCCGATATGACAATGCAGGAATGGACAGCCGATTAATGGATAAAAACTTATCAGCTTCGTCACTGAGGCAACACAACTGCAATGCTTTTCCATCCTCTTGTGCTGCTGGGTCAGCTAATGTGATCGAGGCTATGAGTGGTAGTGTCGGCTGCATGCTTGTGAACCCTAGTTGCAGCAGAAAGATGGGACTAGGATTTCCTGGTGGGCAAGTTCATGCGAGTGTATCACTTTCACTATCCAATGTCACTGGTGAAAGTAGTGCAGCTGATTATCAAGATTGTGGACTTTCACCAGCATTTCTGGCTGGTGAATCACCATGGACATCAAATTTGGATGCTCATTGCCCACAAGCAAGGGACAAAGCTAAGATGAGATACAATGAGAAAAAGAAAACACGAACCTTTGGCAAACAAATCAGATATGCTTCTCGTAAAGCCAGAGCTGATACTAGAAAACGTGTGAGAGGTAGATTTGTTAAGGCGGGTGAAGCATATGACTATGACCCTCTTACATCAACAAGCAACTGA 1305 0.4513 MEPICEFCGVVRAVVYCKSDAARLCLHCDNSVHSANALSRRHLRSLLCDKCNLQPGIYRCMDEKLCICQACDWIGNGCSAPGHRLQSLQFYMGCPSLSDFSRLWSSVLDLPSATGLKAGWGSMNSVAVDENCVSQCLEPKDNEGSLVLGCNKLNEQKPWVGASSSMPGAYSSMPPDRKFTSSYCKDQTPFLPDESNPSKVISFIFSLLINQSQSQGCSNFKDLGLNEGGDLCQGINMDDVAVNFENSDEMIGSSQGHSTCRYDNAGMDSRLMDKNLSASSLRQHNCNAFPSSCAAGSANVIEAMSGSVGCMLVNPSCSRKMGLGFPGGQVHASVSLSLSNVTGESSAADYQDCGLSPAFLAGESPWTSNLDAHCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVRGRFVKAGEAYDYDPLTSTSN* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0631 434 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi12g0631 434 ProSiteProfiles CCT domain profile. 378 420 IPR010402 GO:0005515
Vvi12g0631 434 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 423 - -
Vvi12g0631 434 CDD Bbox1_BBX-like 4 47 - -
Vvi12g0631 434 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vvi12g0631 434 Pfam CCT motif 378 420 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi12g0631 Vvi-Chr12 7291808 7293953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi12g0631 1 434 C2C2-CO-like Transcription Factor Family AT3G21880 41.419 7.42e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vvi12g0631 CCT 5.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0631 - - vvi:100251708 893.264