Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0627 ATGGAGGGTATCTGCCCCATCGATTCACAGTTTTCCCATGAAATCTCTGCTCTTCTCAAACCTCCTCCTGCTCACCAACTACAGGAATATTTTGACAATCTTATAAGGACGAGGCAATATCTCGGTTTGAAAGTAAAACACGATGGAGAATTCGGAAAGGGTGTCTATGCGGACTCGGATTTTGGAGAAGGGGAGCTTGTCCTAAAGGACCAAATGCTAGTGGGTGCTCAACATTCTTCAAATAAGATCAACTGTTTAGTGTGTGGCTTCTGTTTCCGTTTTATTGGCTCCATAGAACTTCAAATTGGAAGGAGACTCTATTTGCAAGGTCTAGGTGTTTCCACGAGTAATGGATGCGGTAGGGAGACCTTTTCACATAATTCACATGATCATTGTCAAGTTGATTCATCTGAGGATGAAGACAATTGTTACATGGAAGATCATGATGAATTGGGAGAATGTGCCTCCAGCAGTTCTAAAGATAAAGTACCTCTCCCTAAAGGGGTTGTGGAATCACTAATGAATGGTGAATTGGCATTGCCTTACCCAAAAGAATTCCCCTTGCCTTCAGCCATTGCATGTTCTGGTGGGTGTGGAGAAGCTTACTATTGTAGTAAGTTATGTGCGGAAGCTGATTGGGAATCATCTCATTCTTTACTTTGTACTGGAGAGAAGTCTGAATCAATATGTAGGGAGGCACTTTCAAAATTTATTCAACATGCTAACGAAACAAATGATATTTTCCTTCTGGCTGCCAAGGTGATTTGTTTCACAATTTTAAGGTACAAGAAATTGAAAAAAGCTCATCTCAAAGAACAAGAAAAATACACTTCAGCCATTGTTTTGAAAAATGGTGATCTACCTCTGCTTTTAGAAGCATGGAAACCAATATCGATGGGATTCAAGAAAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTCATAGTTGTGATGAAGCTGCATTTAGAGCACAAATAAAGGAGCTGGCATTCACGTCTCTTAAGCTCCTTAAGGAAGCCATCTTTTGCAAGGGATGTGAGCCATTATTCTCCCTCGAAATATATGGGCATATTATTGGCATGTTTGAATTAAATAACCTTGATTTGGTTGTAGCATCTCCAGTGGAAGATTATTTTTTATACATTGATGATCTTCCATACCCTCAAAAGAAAAAAGCTGAGGAAATCACACGCCAATTTCTGGATGCTCTTGGTGATGATTATTCAGTTCCTTGTCAAGGTACTGCTTTTTTTCCTCTGCAGAGTTGTATGAACCATTCCTGTTATCCTAATGCAAAAGCATTCAAAAGAGAGGAGGACAGAGATGGCCAAGCAACAATAATTGCCCTCAGACCCATTTTCAAGGAAGAAGAGGTTACCATTTCGTATATAGACGAGGACCTTCCATTTGATGAGAGGCAAGCATTACTTGCAGATTATGGTTTCAGATGCAAGTGCCCCAAGTGCTTAGAAGAAGAGCCATAA 1488 0.4039 MEGICPIDSQFSHEISALLKPPPAHQLQEYFDNLIRTRQYLGLKVKHDGEFGKGVYADSDFGEGELVLKDQMLVGAQHSSNKINCLVCGFCFRFIGSIELQIGRRLYLQGLGVSTSNGCGRETFSHNSHDHCQVDSSEDEDNCYMEDHDELGECASSSSKDKVPLPKGVVESLMNGELALPYPKEFPLPSAIACSGGCGEAYYCSKLCAEADWESSHSLLCTGEKSESICREALSKFIQHANETNDIFLLAAKVICFTILRYKKLKKAHLKEQEKYTSAIVLKNGDLPLLLEAWKPISMGFKKRWWDCIALPDDVHSCDEAAFRAQIKELAFTSLKLLKEAIFCKGCEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLPYPQKKKAEEITRQFLDALGDDYSVPCQGTAFFPLQSCMNHSCYPNAKAFKREEDRDGQATIIALRPIFKEEEVTISYIDEDLPFDERQALLADYGFRCKCPKCLEEEP* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0627 495 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 13 494 IPR044237 GO:0008168
Vvi12g0627 495 Pfam SET domain 392 464 IPR001214 GO:0005515
Vvi12g0627 495 Gene3D SET domain 388 494 IPR046341 -
Vvi12g0627 495 SUPERFAMILY SET domain 37 490 IPR046341 -
Vvi12g0627 495 Gene3D - 140 223 - -
Vvi12g0627 495 Pfam MYND finger 193 221 IPR002893 -
Vvi12g0627 495 SUPERFAMILY HIT/MYND zinc finger-like 192 222 - -
Vvi12g0627 495 CDD SET_SMYD 404 490 - -
Vvi12g0627 495 ProSiteProfiles SET domain profile. 41 465 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi12g0627 SET 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0627 - - vvi:100261937 1028.08