Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g0626 ATGGTGGAGCGAAAACTCTACAAAACGAAGCTCTGTGTGCTGTACGAGAGAGGTCACTGTCCGCGTCAGACCTGCTCTTTCGCCCACGGCGATGCCGAGCTTCGAGGATTCTCCGGTTCCTTTAATGGTAGGCGGGACTATCGAGATGATGACTTGAGGGATAAGCTAGACAGAAGGCATTCTCCACCACGAAGGTATTCCCCTGGAAGAGGTGCAAGAAGCCGGCCTGTCATTCATGGATATAGTCCATCCAGATCCGTTGGAAAAAAGAGTGATAGAAAACATAGAAGGAAACAACAGTTGGACGGACAAAGTGATTTTTCTGGAAGTTTAAGAATTTCAGATGGAACTGATGATAGACTTAAAGAAGGGAAGCTGGCACCGTCTGGTTCCAAAAATGTTCTTGGGGAACAGTTAAAACAAGTTCAGTTAGATATTGACAGACTTGATGATCACAAGAGTCAACTGAAGACCTATATGGAAGAGAGGGTCCAAGAAGCAGATAGTCTTACTTCGAGAATTCAGGAGCTTGAATCTCAGTTATATAAGGAGAGAGAGGATTGCAAAAGGATTACTTCAAAAATTAAGAAGTTCGTCAAAGCACATAGTCGTTATTTACGAATACAAGACGACCTGAAGAGGTCAGAGGCCAGACTTCAGAAGTTGGGAAGTCAACTAATCTCAGATACTTCTAAACATGCCAATGAAGAGGACTCAAGCATTGACATTCTGAGTGATGGAGAGCCCACTGGCAACCATGTAGTGAGTCCTAAGAATGGGCAGCAGATTAAGGCTTCTCCAAGCAAAAAAAGGGCGCACAGTAATTTGGATGCTGAAGGGTCAAAACCAGGAAAAGTAGCCAAAGGAGAAGGATTTCTGGCAGGAACAACCAGATCAGAGAAGCTTTCTCGGTGGAAGATGCAGCATGCTCAATTAATGCATAAAAAGGAAGCTGAGGTTTTGGACAATGGAAATAGTGGCAGTAAGCCCCTAACAATAGAAGGCAAGCATAAGAGAGGGAAGAATGTTTCTGCTAGCATTCCCTTGGCAGATAAGTTGAAGGGTTTGGAGTCTGGGCTTGTGTTGCCATCGACCAGCATGGCTGCTCATGCAGTTGATGAAGTTGAGACAGTTGAAACAGAGAAGATCGAGACTGTTGAAACTGCTTCTAGAGAAGTAGATAAAGTTGCTGCATATGAGATCCCAGGCCTGCCATTTCCACCTCCACCGCCGCCTCCTCACCCTCGTAATGCCTATTCACAGCATCTGAAATGA 1275 0.4502 MVERKLYKTKLCVLYERGHCPRQTCSFAHGDAELRGFSGSFNGRRDYRDDDLRDKLDRRHSPPRRYSPGRGARSRPVIHGYSPSRSVGKKSDRKHRRKQQLDGQSDFSGSLRISDGTDDRLKEGKLAPSGSKNVLGEQLKQVQLDIDRLDDHKSQLKTYMEERVQEADSLTSRIQELESQLYKEREDCKRITSKIKKFVKAHSRYLRIQDDLKRSEARLQKLGSQLISDTSKHANEEDSSIDILSDGEPTGNHVVSPKNGQQIKASPSKKRAHSNLDAEGSKPGKVAKGEGFLAGTTRSEKLSRWKMQHAQLMHKKEAEVLDNGNSGSKPLTIEGKHKRGKNVSASIPLADKLKGLESGLVLPSTSMAAHAVDEVETVETEKIETVETASREVDKVAAYEIPGLPFPPPPPPPHPRNAYSQHLK* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g0626 424 MobiDBLite consensus disorder prediction 228 290 - -
Vvi12g0626 424 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Vvi12g0626 424 MobiDBLite consensus disorder prediction 402 417 - -
Vvi12g0626 424 SUPERFAMILY CCCH zinc finger 4 35 IPR036855 GO:0046872
Vvi12g0626 424 Gene3D - 1 36 - -
Vvi12g0626 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 422 IPR045868 GO:0046872
Vvi12g0626 424 MobiDBLite consensus disorder prediction 401 424 - -
Vvi12g0626 424 MobiDBLite consensus disorder prediction 48 64 - -
Vvi12g0626 424 MobiDBLite consensus disorder prediction 48 133 - -
Vvi12g0626 424 SMART c3hfinal6 6 31 IPR000571 GO:0046872
Vvi12g0626 424 MobiDBLite consensus disorder prediction 252 269 - -
Vvi12g0626 424 Coils Coil 160 194 - -
Vvi12g0626 424 Coils Coil 205 225 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi12g0626 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g0626 - - vvi:100244801 778.474